Ensembl / ensembl-vep
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master: 98%

LAST BUILD BRANCH: feature/sort_vcf_no_header
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LAST BUILD ON BRANCH registry_and_divisions_support
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thomasmaurel 
Removing the ensembl genomes flag eg. Now that the pipeline is using the Ensembl production Species factory we can properly deal with divisions. The division array is checked instead of the EG flag.

9293 of 9370 relevant lines covered (99.18%)

34285.81 hits per line

Relevant lines Covered
9370 RELEVANT LINES 9293 COVERED LINES
34285.81 HITS PER LINE
Source Files on registry_and_divisions_support
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
553 registry_and_divisions_support Removing the ensembl genomes flag eg. Now that the pipeline is using the Ensembl production Species factory we can properly deal with divisions. The division array is checked instead of the EG flag. push thomasmaurel travis-ci pending completion  
547 registry_and_divisions_support Introducting a new parameter called pipeline_dump_dir, this will be pipeline_dir with the addition of a division directory if applicable. This parameter is now used in BaseVep and all the modules are consistently using this directory location. Rep... push thomasmaurel travis-ci pending completion  
528 registry_and_divisions_support Adding support for registry file. The Ensembl Production Species factory is now used to retrieve the core and otherfeatures databases from a registry file. Antispecies array is used to exclude the mouse strains. InitDump is now working on a specie... push thomasmaurel travis-ci pending completion  
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