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LAST BUILD ON BRANCH update/pph2-sift-nf

branch: update/pph2-sift-nf

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• feat_qc
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• feature/LD_refactor
• bugfix/ld_vcf_missing_variant
• release/89
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• feature/sv_freq
• revert-57-registry_and_divisions_support
• update_release_dumping
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• mcarbajo/fix-full-Init_Jobs
• origin/postreleasefix/95
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• fix/errored_rest_test
• (HEAD detached at f398254)
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• revert-699-vr_var_synonyms_104
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• release/105
• update_regulation_pipeline
• fix_phenotype_pipeline_rgd
• fix_phenotype_assembly_rgd
• postreleasefix/106
• release/106
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• update_travis_yml
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• postreleasefix/111
• release/111
• (HEAD detached at 49e610e)
• fix/citations_missing_var
• fix_sv
• add_eva_pipeline
• update_population_sets
• fix/web-vep-input-format
• sin_letter_pep
• add/fetch-multiple-svs
• non_atg
• updating_hgmd_method
• revert/pr_995
• revert/clinvar_import_updates
• update-mode-fix-update-vf
• fix/mavedb-data
• fix/bnd-chr-prefix
• schema_patch_112
• test-db-patch-112
• travis-and-readme-update-to-112
• breakend-parsing
• fix/truncation_elongation_csq
• fix/hgvsp
• fix_dup
• fix/source-vcf-examples
• update_spliceai_slurm
• update_schema
• update_doc_script
• fix_docs
• fix/hgvs_refseq_edit_112
• update_noah_dir
• update/vep-plugin-docs
• fix/hgvsp_singleletter
• update_plugin_script
• changes_vcf_vcf_config.json
• add/tandem_repeat
• eva_5
• fix/web-vep-var-end
• update_release_dump
• hgvsp_shift
• fix/chr-sys-breakends
• update_copyright_2024
• stop_lost_and_retained
• cds_fix
• update/dbNSFP-pipeline
• update/specific-tabix-plugins
• fix/region-sv
• update/dbNSFP4.6c
• fix_start_lost
• add/pangenomes
• schema_docs_update_112
• fix_incompatibility
• fix_sv_so
• api_doc
• fix-go-dumps
• fix_pop_url_doc
• fix/bnd-reg
• update_config_flatfiles
• improve/plugin-fetch-variants-from-db-cache
• add/chr_breakpoint_term
• update/clinvar_114
• update_spliceai_gpu
• update/dbNSFP_4.8c_4.9c
• fix/hgvsg-multiple-alt-alleles
• patch_114
• add/jvm-check
• patch_test_db
• eva_imp_csi
• fix_hgvsg
• update/remapping_pipeline_114
• update/phenotype_gwas_114
• dbnsfp_academic
• fix/hgvsc_refseq
• update/regulation_pipeline
• update/clinvar_format_somatic
• vc_tweaks
• hotfix/cds_codon
• eva_release_6
• update/regulation_remove_option
• update/tv_pipeline_ehive_version
• reg_conf_update