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LAST BUILD ON BRANCH update_sift_nxt_2

branch: update_sift_nxt_2

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• update_sift_nxt_2
• (HEAD detached at 49e610e)
• (HEAD detached at 531289c)
• (HEAD detached at ca61a9c)
• (HEAD detached at e7681c3)
• (HEAD detached at f398254)
• add-gencc
• add-mavedb-logging-and-fix-mem
• add/chr_breakpoint_term
• add/fetch-multiple-svs
• add/jvm-check
• add/pangenomes
• add/tandem_repeat
• add_eva_pipeline
• add_missing_attribs_116
• additional-gerp-fixes
• api_doc
• breakend-parsing
• bugfix/ld_vcf_missing_variant
• bugfix/vcf-file-push-error
• cadd_turkey
• cds_fix
• changes_vcf_vcf_config.json
• chcadd
• dbnsfp_academic
• dbnsfp_pipeline_upd
• doc_geno_fix
• eva_5
• eva_7
• eva_imp_csi
• eva_release_6
• feat_qc
• feature/LD_refactor
• feature/at7_sample
• feature/backup_db
• feature/rat_citation
• feature/sv_freq
• feature/transcript-haplotypes
• feature/vcf-backend
• fix-go-dumps
• fix/ClinVar_XML_parsing
• fix/bnd-chr-prefix
• fix/bnd-reg
• fix/chr-sys-breakends
• fix/citations_missing_var
• fix/clinvar_post_processing_115
• fix/errored_rest_test
• fix/haplo_error
• fix/haplo_error_116
• fix/hgvs_refseq_edit_112
• fix/hgvsc_refseq
• fix/hgvsg-multiple-alt-alleles
• fix/hgvsp
• fix/hgvsp_singleletter
• fix/mavedb-data
• fix/phenotypes_cgc
• fix/region-sv
• fix/source-vcf-examples
• fix/trim_sequence
• fix/truncation_elongation_csq
• fix/utils_inv_start_altered
• fix/web-vep-input-format
• fix/web-vep-var-end
• fix_docs
• fix_dup
• fix_hgvsg
• fix_incompatibility
• fix_phenotype_assembly_rgd
• fix_phenotype_pipeline_rgd
• fix_phenotype_warning_106
• fix_pop_url_doc
• fix_release_dump
• fix_start_lost
• fix_sv
• fix_sv_so
• fix_sv_so_2
• fix_typo
• fix_vep_test_randomness
• frameshift_stop_retained
• gerp_bugfixes
• github-actions-update_cp
• hgvsp_shift
• hotfix/cds_codon
• hotfix/perl-object-in-output
• improve/plugin-fetch-variants-from-db-cache
• main
• masetr
• master
• mavedb-nf-fix
• mcarbajo/fix-full-Init_Jobs
• missed-db-schema-patch
• non_atg
• non_ref_pheno
• nonref_pheno
• origin/postreleasefix/95
• patch_114
• patch_test_db
• postreleasefix/100
• postreleasefix/101
• postreleasefix/102
• postreleasefix/103
• postreleasefix/104
• postreleasefix/105
• postreleasefix/106
• postreleasefix/107
• postreleasefix/108
• postreleasefix/109
• postreleasefix/110
• postreleasefix/111
• postreleasefix/79
• postreleasefix/80
• postreleasefix/81
• postreleasefix/82
• postreleasefix/83
• postreleasefix/84
• postreleasefix/85
• postreleasefix/87
• postreleasefix/88
• postreleasefix/89
• postreleasefix/90
• postreleasefix/91
• postreleasefix/93
• postreleasefix/94
• postreleasefix/95
• postreleasefix/96
• postreleasefix/97
• postreleasefix/98
• postreleasefix/99
• reg_conf_update
• release-109
• release/100
• release/101
• release/102
• release/103
• release/104
• release/105
• release/106
• release/107
• release/108
• release/109
• release/110
• release/111
• release/78
• release/79
• release/80
• release/81
• release/82
• release/83
• release/84
• release/85
• release/86
• release/87
• release/88
• release/89
• release/90
• release/91
• release/92
• release/93
• release/94
• release/95
• release/96
• release/97
• release/98
• release/99
• release1
• remove_dependency_xml
• removing_hardcode_pipeline_aa
• revert-57-registry_and_divisions_support
• revert-699-vr_var_synonyms_104
• revert/clinvar_import_updates
• revert/pr_995
• schema_docs_update_112
• schema_patch_112
• sin_letter_pep
• stop_lost_and_retained
• sv_multi_allelic
• task/db_patching_115
• test-db-patch-112
• travis-and-readme-update-to-112
• travis_ubuntu
• upd_bam_pf
• upd_pred
• upd_remapping
• upd_vcf_config
• updare_
• update-mode-fix-update-vf
• update/clinvar_114
• update/clinvar_e116
• update/clinvar_format_somatic
• update/dbNSFP-pipeline
• update/dbNSFP4.6c
• update/dbNSFP_4.8c_4.9c
• update/phenofeature_clinvar_116
• update/phenotype_gwas_114
• update/phenotype_pipeline_114
• update/pph2-sift-nf
• update/regulation_pipeline
• update/regulation_remove_option
• update/remapping_pipeline_114
• update/specific-tabix-plugins
• update/travis_and_readme_115
• update/tv_pipeline_ehive_version
• update/vep-plugin-docs
• update_attrib_file_116
• update_clinvar_somatic
• update_config_flatfiles
• update_copyright_2024
• update_doc_script
• update_g2p_phenotype_116
• update_gene_annotation_script
• update_hgmd_script
• update_meta_coord_for_private
• update_noah_dir
• update_open_targets_file
• update_pf
• update_pheno_hear_ear
• update_plugin_script
• update_population_sets
• update_protein_function_115_connection
• update_regulation_pipeline
• update_release_dump
• update_release_dumping
• update_schema
• update_sift_nxt
• update_spliceai_gpu
• update_spliceai_slurm
• update_travis_yml
• updating_g2p_pheno
• updating_hgmd_method
• vc_tweaks
• vcf_corrupt