Ensembl / ensembl-variation

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LAST BUILD ON BRANCH fix_phenotype_assembly_rgd

branch: fix_phenotype_assembly_rgd

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• fix_phenotype_assembly_rgd
• (HEAD detached at 49e610e)
• (HEAD detached at 531289c)
• (HEAD detached at ca61a9c)
• (HEAD detached at e7681c3)
• (HEAD detached at f398254)
• add-gencc
• add-mavedb-logging-and-fix-mem
• add/chr_breakpoint_term
• add/fetch-multiple-svs
• add/jvm-check
• add/pangenomes
• add/tandem_repeat
• add_eva_pipeline
• add_missing_attribs_116
• api_doc
• breakend-parsing
• bugfix/ld_vcf_missing_variant
• bugfix/vcf-file-push-error
• cadd_turkey
• cds_fix
• changes_vcf_vcf_config.json
• chcadd
• dbnsfp_academic
• dbnsfp_pipeline_upd
• doc_geno_fix
• eva_5
• eva_7
• eva_imp_csi
• eva_release_6
• feat_qc
• feature/LD_refactor
• feature/at7_sample
• feature/backup_db
• feature/rat_citation
• feature/sv_freq
• feature/transcript-haplotypes
• feature/vcf-backend
• fix-go-dumps
• fix/ClinVar_XML_parsing
• fix/bnd-chr-prefix
• fix/bnd-reg
• fix/chr-sys-breakends
• fix/citations_missing_var
• fix/clinvar_post_processing_115
• fix/errored_rest_test
• fix/haplo_error
• fix/haplo_error_116
• fix/hgvs_refseq_edit_112
• fix/hgvsc_refseq
• fix/hgvsg-multiple-alt-alleles
• fix/hgvsp
• fix/hgvsp_singleletter
• fix/mavedb-data
• fix/phenotypes_cgc
• fix/region-sv
• fix/source-vcf-examples
• fix/trim_sequence
• fix/truncation_elongation_csq
• fix/utils_inv_start_altered
• fix/web-vep-input-format
• fix/web-vep-var-end
• fix_docs
• fix_dup
• fix_hgvsg
• fix_incompatibility
• fix_phenotype_pipeline_rgd
• fix_phenotype_warning_106
• fix_pop_url_doc
• fix_release_dump
• fix_start_lost
• fix_sv
• fix_sv_so
• fix_sv_so_2
• fix_typo
• fix_vep_test_randomness
• frameshift_stop_retained
• github-actions-update_cp
• hgvsp_shift
• hotfix/cds_codon
• hotfix/perl-object-in-output
• improve/plugin-fetch-variants-from-db-cache
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• mcarbajo/fix-full-Init_Jobs
• missed-db-schema-patch
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• nonref_pheno
• origin/postreleasefix/95
• patch_114
• patch_test_db
• postreleasefix/100
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• postreleasefix/111
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• release-109
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• release1
• remove_dependency_xml
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• revert-57-registry_and_divisions_support
• revert-699-vr_var_synonyms_104
• revert/clinvar_import_updates
• revert/pr_995
• schema_docs_update_112
• schema_patch_112
• sin_letter_pep
• stop_lost_and_retained
• sv_multi_allelic
• task/db_patching_115
• test-db-patch-112
• travis-and-readme-update-to-112
• travis_ubuntu
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• upd_pred
• upd_remapping
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• updare_
• update-mode-fix-update-vf
• update/clinvar_114
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• update/clinvar_format_somatic
• update/dbNSFP-pipeline
• update/dbNSFP4.6c
• update/dbNSFP_4.8c_4.9c
• update/phenofeature_clinvar_116
• update/phenotype_gwas_114
• update/phenotype_pipeline_114
• update/pph2-sift-nf
• update/regulation_pipeline
• update/regulation_remove_option
• update/remapping_pipeline_114
• update/specific-tabix-plugins
• update/travis_and_readme_115
• update/tv_pipeline_ehive_version
• update/vep-plugin-docs
• update_attrib_file_116
• update_clinvar_somatic
• update_config_flatfiles
• update_copyright_2024
• update_doc_script
• update_g2p_phenotype_116
• update_gene_annotation_script
• update_hgmd_script
• update_meta_coord_for_private
• update_noah_dir
• update_open_targets_file
• update_pf
• update_pheno_hear_ear
• update_plugin_script
• update_population_sets
• update_protein_function_115_connection
• update_regulation_pipeline
• update_release_dump
• update_release_dumping
• update_schema
• update_sift_nxt
• update_sift_nxt_2
• update_spliceai_gpu
• update_spliceai_slurm
• update_travis_yml
• updating_g2p_pheno
• updating_hgmd_method
• vc_tweaks
• vcf_corrupt

Build # 4282

Build Type

Pull #744

travis-ci-com

Committed by web-flow

Commit Message

Merge f5523622e into 112dee61d

Pull Request Pull Request #744: Fix phenotype import for rat and add boxer

Run Details

22091 of 26579 relevant lines covered (83.11%)

1456.1 hits per line