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Ensembl / ensembl-variation
81%
release/84: 78%

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Build:
LAST BUILD BRANCH: upd_bam_pf
DEFAULT BRANCH: release/84
Repo Added 26 Nov 2014 03:26PM UTC
Files 217
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LAST BUILD ON BRANCH release/88
branch: release/88
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  • release/88
  • (HEAD detached at 49e610e)
  • (HEAD detached at 531289c)
  • (HEAD detached at ca61a9c)
  • (HEAD detached at e7681c3)
  • (HEAD detached at f398254)
  • add-gencc
  • add-mavedb-logging-and-fix-mem
  • add/chr_breakpoint_term
  • add/fetch-multiple-svs
  • add/jvm-check
  • add/pangenomes
  • add/tandem_repeat
  • add_eva_pipeline
  • add_missing_attribs_116
  • api_doc
  • breakend-parsing
  • bugfix/ld_vcf_missing_variant
  • bugfix/vcf-file-push-error
  • cadd_turkey
  • cds_fix
  • changes_vcf_vcf_config.json
  • chcadd
  • dbnsfp_academic
  • dbnsfp_pipeline_upd
  • doc_geno_fix
  • eva_5
  • eva_7
  • eva_imp_csi
  • eva_release_6
  • feat_qc
  • feature/LD_refactor
  • feature/at7_sample
  • feature/backup_db
  • feature/rat_citation
  • feature/sv_freq
  • feature/transcript-haplotypes
  • feature/vcf-backend
  • fix-go-dumps
  • fix/ClinVar_XML_parsing
  • fix/bnd-chr-prefix
  • fix/bnd-reg
  • fix/chr-sys-breakends
  • fix/citations_missing_var
  • fix/clinvar_post_processing_115
  • fix/errored_rest_test
  • fix/haplo_error
  • fix/haplo_error_116
  • fix/hgvs_refseq_edit_112
  • fix/hgvsc_refseq
  • fix/hgvsg-multiple-alt-alleles
  • fix/hgvsp
  • fix/hgvsp_singleletter
  • fix/mavedb-data
  • fix/phenotypes_cgc
  • fix/region-sv
  • fix/source-vcf-examples
  • fix/trim_sequence
  • fix/truncation_elongation_csq
  • fix/utils_inv_start_altered
  • fix/web-vep-input-format
  • fix/web-vep-var-end
  • fix_docs
  • fix_dup
  • fix_hgvsg
  • fix_incompatibility
  • fix_phenotype_assembly_rgd
  • fix_phenotype_pipeline_rgd
  • fix_phenotype_warning_106
  • fix_pop_url_doc
  • fix_release_dump
  • fix_start_lost
  • fix_sv
  • fix_sv_so
  • fix_sv_so_2
  • fix_typo
  • fix_vep_test_randomness
  • frameshift_stop_retained
  • github-actions-update_cp
  • hgvsp_shift
  • hotfix/cds_codon
  • hotfix/perl-object-in-output
  • improve/plugin-fetch-variants-from-db-cache
  • main
  • masetr
  • master
  • mavedb-nf-fix
  • mcarbajo/fix-full-Init_Jobs
  • missed-db-schema-patch
  • non_atg
  • non_ref_pheno
  • nonref_pheno
  • origin/postreleasefix/95
  • patch_114
  • patch_test_db
  • postreleasefix/100
  • postreleasefix/101
  • postreleasefix/102
  • postreleasefix/103
  • postreleasefix/104
  • postreleasefix/105
  • postreleasefix/106
  • postreleasefix/107
  • postreleasefix/108
  • postreleasefix/109
  • postreleasefix/110
  • postreleasefix/111
  • postreleasefix/79
  • postreleasefix/80
  • postreleasefix/81
  • postreleasefix/82
  • postreleasefix/83
  • postreleasefix/84
  • postreleasefix/85
  • postreleasefix/87
  • postreleasefix/88
  • postreleasefix/89
  • postreleasefix/90
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  • postreleasefix/94
  • postreleasefix/95
  • postreleasefix/96
  • postreleasefix/97
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  • postreleasefix/99
  • reg_conf_update
  • release-109
  • release/100
  • release/101
  • release/102
  • release/103
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  • release/111
  • release/78
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  • release/80
  • release/81
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  • release/84
  • release/85
  • release/86
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  • release/89
  • release/90
  • release/91
  • release/92
  • release/93
  • release/94
  • release/95
  • release/96
  • release/97
  • release/98
  • release/99
  • release1
  • remove_dependency_xml
  • removing_hardcode_pipeline_aa
  • revert-57-registry_and_divisions_support
  • revert-699-vr_var_synonyms_104
  • revert/clinvar_import_updates
  • revert/pr_995
  • schema_docs_update_112
  • schema_patch_112
  • sin_letter_pep
  • stop_lost_and_retained
  • sv_multi_allelic
  • task/db_patching_115
  • test-db-patch-112
  • travis-and-readme-update-to-112
  • travis_ubuntu
  • upd_bam_pf
  • upd_pred
  • upd_remapping
  • upd_vcf_config
  • updare_
  • update-mode-fix-update-vf
  • update/clinvar_114
  • update/clinvar_e116
  • update/clinvar_format_somatic
  • update/dbNSFP-pipeline
  • update/dbNSFP4.6c
  • update/dbNSFP_4.8c_4.9c
  • update/phenofeature_clinvar_116
  • update/phenotype_gwas_114
  • update/phenotype_pipeline_114
  • update/pph2-sift-nf
  • update/regulation_pipeline
  • update/regulation_remove_option
  • update/remapping_pipeline_114
  • update/specific-tabix-plugins
  • update/travis_and_readme_115
  • update/tv_pipeline_ehive_version
  • update/vep-plugin-docs
  • update_attrib_file_116
  • update_clinvar_somatic
  • update_config_flatfiles
  • update_copyright_2024
  • update_doc_script
  • update_g2p_phenotype_116
  • update_gene_annotation_script
  • update_hgmd_script
  • update_meta_coord_for_private
  • update_noah_dir
  • update_open_targets_file
  • update_pf
  • update_pheno_hear_ear
  • update_plugin_script
  • update_population_sets
  • update_protein_function_115_connection
  • update_regulation_pipeline
  • update_release_dump
  • update_release_dumping
  • update_schema
  • update_sift_nxt
  • update_sift_nxt_2
  • update_spliceai_gpu
  • update_spliceai_slurm
  • update_travis_yml
  • updating_g2p_pheno
  • updating_hgmd_method
  • vc_tweaks
  • vcf_corrupt

pending completion
1495

push

travis-ci

willmclaren
remove cached data from VF

17952 of 22166 relevant lines covered (80.99%)

1081.41 hits per line

Relevant lines Covered
Build:
Build:
22166 RELEVANT LINES 17952 COVERED LINES
1081.41 HITS PER LINE
Source Files on release/88
  • List 0
  • Changed 1
  • Source Changed 1
  • Coverage Changed 1
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
1495 release/88 remove cached data from VF push 22 Aug 2017 08:23AM UTC willmclaren travis-ci pending completion  
1418 release/88 Merge pull request #53 from MatBarba/fix_get_all_samples Fix loop on sample synonyms in get_all_Samples push 15 Jun 2017 12:02PM UTC web-flow travis-ci pending completion  
1408 release/88 correctly check lengths from fasta_db when looking up synonyms push 02 Jun 2017 01:00PM UTC willmclaren travis-ci pending completion  
1392 release/88 rm debug statement push 17 May 2017 01:47PM UTC at7 travis-ci pending completion  
1387 release/88 filter results for fetch_by_VariationFeatures push 16 May 2017 10:55AM UTC at7 travis-ci pending completion  
1369 release/88 Fix loop on sample synonyms in get_all_Samples Two parts bug: instead of looping on all sample_synonyms, only the first synonym was retrieved at first. So the array ref was dereferenced in a previous commit, but the second part of the bug was not... Pull #53 28 Apr 2017 02:33PM UTC web-flow travis-ci pending completion  
1365 release/88 Merging postreleasefix/88 to release/88 * postreleasefix/88: further fix for use_feature_ref push 25 Apr 2017 09:19AM UTC willmclaren travis-ci pending completion  
1362 release/88 dereference array push 24 Apr 2017 12:20PM UTC at7 travis-ci pending completion  
1360 release/88 Merging postreleasefix/88 to release/88 * postreleasefix/88: fix for use_transcript_ref from VEP push 24 Apr 2017 08:38AM UTC willmclaren travis-ci pending completion  
1356 release/88 Merge pull request #51 from lairdm/release/88 Fix Makefile so rebuilding binaries works properly push 13 Apr 2017 02:57PM UTC web-flow travis-ci pending completion  
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