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Clinical-Genomics / microSALT
76%
master: 32%

Build:
Build:
LAST BUILD BRANCH: feat-pubmlst-util-retry
DEFAULT BRANCH: master
Repo Added 25 Apr 2019 10:43AM UTC
Files 21
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LAST BUILD ON BRANCH 180-fix-missing-vim-genes
branch: 180-fix-missing-vim-genes
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  • 180-fix-missing-vim-genes
  • 149-fix-missing-resistances
  • 149-fix-missing-resistances-BACKUP
  • 174-move-ci-to-gha
  • 174-move-ci-to-gha-BACKUP
  • 183-remove-kmer-tackning-col
  • 185-fix-duplicate-resistance-rows
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  • feat-pubmlst-util-retry
  • fix-199-incorrect-database-used
  • fix-200-move-instantiation-of-app
  • fix-pubmlst-query-insert
  • fix_MLST_oxford
  • fix_pubMLST_downloads
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  • fix_reportfolder
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  • master
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  • noncareful_assembly_default
  • oddOrganism
  • param_file
  • patching_struct
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  • pytest
  • rc4.1.0
  • rc4.2.0
  • rc400
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  • replace-custom-oauth-header
  • resistance-hotfix
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  • revert-189-rc410
  • revert-192-add-pubmlst-utils
  • slurmid_fix
  • tidbits
  • ultrafix
  • v2.8.24
  • v3.1.0

20 Sep 2024 02:45PM UTC coverage: 76.105% (+0.3%) from 75.817%
#256

Pull #182

travis-ci

samuell
Remove internal file paths
Pull Request #182: Fix missing vim genes

1 of 6 new or added lines in 2 files covered. (16.67%)

3 existing lines in 1 file now uncovered.

1997 of 2624 relevant lines covered (76.11%)

0.76 hits per line

Relevant lines Covered
Build:
Build:
2624 RELEVANT LINES 1997 COVERED LINES
0.76 HITS PER LINE
Source Files on 180-fix-missing-vim-genes
  • Tree
  • List 14
  • Changed 3
  • Source Changed 0
  • Coverage Changed 3
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
#256 180-fix-missing-vim-genes Remove internal file paths Pull #182 20 Sep 2024 02:48PM UTC samuell travis-ci
76.11
#255 180-fix-missing-vim-genes Check if reference_length is set before showing This is so that the report rendering is not completely stopped if reference_length is not set Pull #182 16 Sep 2024 02:09PM UTC samuell travis-ci
76.11
#254 180-fix-missing-vim-genes Replace Spades assembler with SKESA push 22 Aug 2024 04:20PM UTC samuell travis-ci
76.3
#253 180-fix-missing-vim-genes Fix code that would delete blast matches with identical coverage push 22 Aug 2024 02:16PM UTC samuell travis-ci
76.12
#252 180-fix-missing-vim-genes Simplify check for genes in test push 22 Aug 2024 02:12PM UTC samuell travis-ci
76.12
#251 180-fix-missing-vim-genes 149 fix missing resistances (#179) * Add more blast hits in resistance test data * Return hits in scraping method and fail test by requiring blaOXA-48 * Fix #149 by making regex specific and not matching multiple genes Pull #178 22 Aug 2024 02:07PM UTC web-flow travis-ci
75.82
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