VariantEffect / mavedb-api / 36787347394
90%
main: 89%

LAST BUILD BRANCH: release-2026.3.0
DEFAULT BRANCH: main
Ran
Jobs 1
Files 376
Run time 2min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
coverage: 90.352% (+0.8%) from 89.504%
36787347394

push

github

web-flow 
Merge pull request #791 from VariantEffect/feature/bencap/allele-centric-mapping-and-storage

epic: Allele centric mapping, storage, and service

3200 of 3404 new or added lines in 113 files covered. (94.01%)

41 existing lines in 9 files now uncovered.

16539 of 18305 relevant lines covered (90.35%)

0.9 hits per line

Uncovered Changes

Lines Coverage ∆ File
85
72.31
src/mavedb/scripts/backfill_campaign.py
13
88.24
56.03% src/mavedb/routers/variants.py
13
60.61
src/mavedb/worker/lib/translation_ports.py
12
90.63
-6.73% src/mavedb/worker/jobs/external_services/vep.py
11
90.09
src/mavedb/lib/vrs_utils.py
7
83.72
-16.28% src/mavedb/lib/variant_translations.py
7
58.14
src/mavedb/scripts/variant_annotations.py
5
98.19
-1.5% src/mavedb/lib/score_calibrations.py
5
28.77
0.72% src/mavedb/scripts/run_pipeline.py
5
51.46
1.19% src/mavedb/scripts/run_score_set_pipelines.py
4
94.37
src/mavedb/lib/allele_detail.py
4
97.84
-2.16% src/mavedb/worker/jobs/external_services/clingen.py
4
98.17
src/mavedb/worker/jobs/variant_processing/reverse_translation.py
3
97.05
-0.73% src/mavedb/worker/jobs/variant_processing/mapping.py
2
83.33
0.98% src/mavedb/data_providers/services.py
2
96.67
-3.33% src/mavedb/lib/annotation_status_manager.py
2
94.9
-0.05% src/mavedb/lib/csv/variant.py
2
94.59
src/mavedb/models/annotation_event.py
2
90.0
src/mavedb/models/enums/sequence_level.py
2
94.74
src/mavedb/models/mapping_record.py
2
35.0
-3.89% src/mavedb/worker/settings/lifecycle.py
1
73.91
1.91% src/mavedb/deps.py
1
99.06
src/mavedb/lib/allele_measurements.py
1
98.55
src/mavedb/lib/annotation/calibration.py
1
96.97
src/mavedb/lib/annotation/context.py
1
91.89
-8.11% src/mavedb/lib/annotation/document.py
1
97.83
src/mavedb/lib/clinical_controls.py
1
97.96
-0.71% src/mavedb/lib/csv/fetch.py
1
99.1
-0.9% src/mavedb/lib/gnomad.py
1
98.65
src/mavedb/lib/score_set_variants.py
1
97.73
src/mavedb/routers/alleles.py
1
84.3
1.06% src/mavedb/routers/score_sets.py
1
98.85
-1.15% src/mavedb/worker/jobs/external_services/gnomad.py

Coverage Regressions

Lines Coverage ∆ File
16
28.13
-50.0% src/mavedb/lib/utils.py
8
67.09
-10.13% src/mavedb/lib/target_genes.py
7
85.45
6.33% src/mavedb/lib/clingen/allele_registry.py
3
86.89
-4.92% src/mavedb/lib/slack.py
2
91.89
-8.11% src/mavedb/lib/annotation/document.py
2
35.0
-3.89% src/mavedb/worker/settings/lifecycle.py
1
96.3
-3.7% src/mavedb/models/variant_annotation_status.py
1
93.33
1.15% src/mavedb/scripts/export_public_data.py
1
97.84
-2.16% src/mavedb/worker/jobs/external_services/clingen.py
Jobs
ID Job ID Ran Files Coverage
1 36787347394.1 376
90.35
GitHub Action Run
Source Files on build 36787347394