hammerlab / guacamole / 2519
78%

DEFAULT BRANCH: master
Ran
Jobs 1
Files 128
Run time 8s
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2519

Pull #605

travis-ci

web-flow 
fix SJC end to end test with filter arguments
Pull Request #605: Remove PileupFilter and revamp InputFilters

42 of 42 new or added lines in 7 files covered. (100.0%)

2383 of 3010 relevant lines covered (79.17%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
51.27
 6.34% src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
1
92.86
 src/main/scala/org/hammerlab/guacamole/readsets/io/ReadFilterArgs.scala
2
82.76
 0.0% src/main/scala/org/hammerlab/guacamole/reference/ReferenceBroadcast.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
66.67
 -33.33% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMinimumLikelihoodFilter.scala
1
66.67
 -33.33% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticVAFFilter.scala
1
17.65
 -2.94% src/main/scala/org/hammerlab/guacamole/loci/partitioning/CappedRegionsPartitioner.scala
1
62.5
 -6.25% src/main/scala/org/hammerlab/guacamole/reference/Interval.scala
1
83.33
 0.0% src/main/scala/org/hammerlab/guacamole/readsets/args/Base.scala
1
93.55
 -3.23% src/main/scala/org/hammerlab/guacamole/pileup/Pileup.scala
1
88.68
 -1.89% src/main/scala/org/hammerlab/guacamole/loci/set/LociParser.scala
1
83.33
 -8.33% src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/TumorDNASingleSampleSingleAlleleEvidence.scala
1
96.52
 0.87% src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/MultiSampleSingleAlleleEvidence.scala
1
66.67
 -8.33% src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/TumorRNASingleSampleSingleAlleleEvidence.scala
1
66.67
 -33.33% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAlternateReadDepthFilter.scala
1
85.71
 0.0% src/main/scala/org/hammerlab/guacamole/commands/SparkCommand.scala
2
84.17
 -1.44% src/main/scala/org/hammerlab/guacamole/assembly/DeBruijnGraph.scala
3
82.76
 0.0% src/main/scala/org/hammerlab/guacamole/reference/ReferenceBroadcast.scala
3
55.56
 -27.78% src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/MultiSampleAnnotations.scala
3
95.45
 0.0% src/main/scala/org/hammerlab/guacamole/commands/SomaticJointCaller.scala
4
50.0
 0.0% src/main/scala/org/hammerlab/guacamole/reference/ReferenceRegion.scala
4
73.91
 -0.62% src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
5
87.8
 -2.2% src/main/scala/org/hammerlab/guacamole/readsets/rdd/CoverageRDD.scala
7
57.14
 0.0% src/main/scala/org/hammerlab/guacamole/loci/LociArgs.scala
7
0.0
 0.0% src/main/scala/org/hammerlab/guacamole/Main.scala
9
60.0
 0.0% src/main/scala/org/hammerlab/guacamole/loci/set/LociSet.scala
50
51.27
 6.34% src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
Jobs
ID Job ID Ran Files Coverage
1 2519.1 128
79.17
 Travis Job 2519.1
Source Files on build 2519
Coverage ∆ File Lines Relevant Covered Missed Hits/Line