hammerlab / guacamole / 2508
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Files 130
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Merge pull request #603 from ryan-williams/plc

add `partition-loci` cmd

8 of 8 new or added lines in 3 files covered. (100.0%)

2369 of 3012 relevant lines covered (78.65%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
100.0
 src/main/scala/org/hammerlab/guacamole/Main.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/loci/partitioning/HalfWindowArgs.scala
4
100.0
 src/main/scala/org/hammerlab/guacamole/commands/PartitionLoci.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/scala/org/hammerlab/guacamole/distributed/RegionsByContig.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMedianMismatchFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/pileup_summarization/ReadSubsequence.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/InsufficientNormal.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticReadDepthFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAverageBaseQualityFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/commands/SparkCommand.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/assembly/DeBruijnGraph.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/SingleSampleAnnotations.scala
15
100.0
 src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
Jobs
ID Job ID Ran Files Coverage
1 2508.1 0
78.65
 Travis Job 2508.1
Source Files on build 2508
Detailed source file information is not available for this build.