hammerlab / guacamole / 2513
78%

DEFAULT BRANCH: master
Ran
Jobs 1
Files 133
Run time 6s
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2513

Pull #600

travis-ci

web-flow 
Merge in master
Pull Request #600: fold AffineGapPenaltyAlignment into ReadAlignment

58 of 58 new or added lines in 4 files covered. (100.0%)

2434 of 3087 relevant lines covered (78.85%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
79.25
 0.0% src/main/scala/org/hammerlab/guacamole/assembly/AssemblyUtils.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
70.21
 -2.13% src/main/scala/org/hammerlab/guacamole/jointcaller/AlleleAtLocus.scala
1
96.52
 0.87% src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/MultiSampleSingleAlleleEvidence.scala
1
94.34
 0.0% src/main/scala/org/hammerlab/guacamole/jointcaller/pileup_summarization/ReadSubsequence.scala
1
30.65
 -1.61% src/main/scala/org/hammerlab/guacamole/variants/GenotypeOutputArgs.scala
1
62.5
 -6.25% src/main/scala/org/hammerlab/guacamole/reference/Interval.scala
1
56.92
 -1.54% src/main/scala/org/hammerlab/guacamole/readsets/rdd/PartitionedRegions.scala
1
83.33
 -8.33% src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/TumorDNASingleSampleSingleAlleleEvidence.scala
1
66.67
 -8.33% src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/TumorRNASingleSampleSingleAlleleEvidence.scala
1
66.67
 -33.33% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticVAFFilter.scala
1
66.67
 -33.33% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMinimumLikelihoodFilter.scala
1
75.0
 -25.0% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAverageMappingQualityFilter.scala
1
84.89
 -0.72% src/main/scala/org/hammerlab/guacamole/assembly/DeBruijnGraph.scala
2
93.94
 -1.52% src/main/scala/org/hammerlab/guacamole/commands/SomaticJointCaller.scala
2
15.69
 -29.24% src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
3
74.53
 0.0% src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
3
55.56
 -27.78% src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/MultiSampleAnnotations.scala
3
75.0
 -10.71% src/main/scala/org/hammerlab/guacamole/commands/SparkCommand.scala
5
87.8
 -2.2% src/main/scala/org/hammerlab/guacamole/readsets/rdd/CoverageRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2513.1 133
78.85
 Travis Job 2513.1
Source Files on build 2513
Coverage ∆ File Lines Relevant Covered Missed Hits/Line