hammerlab / guacamole / 2513
78%

DEFAULT BRANCH: master
Ran
Jobs 1
Files 133
Run time 6s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2513

Pull #600

travis-ci

web-flow 
Merge in master
Pull Request #600: fold AffineGapPenaltyAlignment into ReadAlignment

58 of 58 new or added lines in 4 files covered. (100.0%)

2434 of 3087 relevant lines covered (78.85%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
100.0
 src/main/scala/org/hammerlab/guacamole/assembly/AssemblyUtils.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/AlleleAtLocus.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/MultiSampleSingleAlleleEvidence.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/pileup_summarization/ReadSubsequence.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/variants/GenotypeOutputArgs.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/reference/Interval.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/readsets/rdd/PartitionedRegions.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/TumorDNASingleSampleSingleAlleleEvidence.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/TumorRNASingleSampleSingleAlleleEvidence.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticVAFFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMinimumLikelihoodFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAverageMappingQualityFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/assembly/DeBruijnGraph.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/commands/SomaticJointCaller.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/MultiSampleAnnotations.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/commands/SparkCommand.scala
5
100.0
 src/main/scala/org/hammerlab/guacamole/readsets/rdd/CoverageRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2513.1 0
78.85
 Travis Job 2513.1
Source Files on build 2513
Detailed source file information is not available for this build.