FAIRmat-NFDI / pynxtools / 34624192903

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Json map copy mode (#807)

* First working version

* Adopt structure to dict, and add json writer

* Remove Nexus-related keys

* Fix linting and test

* extend test to attributes

* Add cli command

* Add documentation

* Some code cleaning

* Check for valid hdf5 file

* Add integration test for json map reader copy mode

* linting

* rebase issues

* ensure root-level attributes are skipped

* Apply batched suggestions from code review

Review suggestions

Co-authored-by: Lukas Pielsticker <50139597+lukaspie@users.noreply.github.com>

* rename cli command, and add to docs index

* Add listing of custom root attributes

* fix mkdocs serve

* fix unwanted filtering of non-NXroot root attributes

* Fix headline

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Co-authored-by: lukaspie <lukaspie@github.com>
Co-authored-by: Lukas Pielsticker <50139597+lukaspie@users.noreply.github.com>

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