cokelaer / rnaseq / 32596079512

80%

Build Type

push

github

Committed by cokelaer

Commit Message

Add --genome-accession to download the genome and its annotation from NCBI

The genome sequence and its annotation can now be downloaded on the fly
given a NCBI assembly accession, into a local directory named after that
accession. The NCBI 'datasets' executable is used when available,
otherwise the NCBI datasets REST API is used, which requires no external
software. Existing files are re-used unless --force-genome-download is
given.

--genome-accession and --genome-directory are mutually exclusive, and one
of them is now required.

Coverage Stats

82 of 89 new or added lines in 2 files covered. (92.13%)

28 existing lines in 1 file now uncovered.

214 of 269 relevant lines covered (79.55%)

1.59 hits per line