27296752625
80%

Ran 10 Jun 2026 06:21PM UTC

Jobs 1

Files 29

Run time 3s

Badge

Embed ▾

pending completion

Build # 27296752625

Build Type

push

github

Committed by

web-flow

Commit Message

v1.38.0: roll up GI/CNS tissues in --by-tissue, --expand-tissues to split (#328)

Source studies label the same anatomical region at different granularity — the
HLA Ligand Atlas (PMID 33858848) uses specific organs (Colon, Esophagus, Brain,
Cerebellum, ...) while older studies use coarse umbrellas (Gastrointestinal
Tract, Central nervous system), so they overlapped in --by-tissue.

By DEFAULT, specific organs now roll up to their umbrella (GI tract / CNS); a
new --expand-tissues flag splits them into organs, marking umbrella-LABELED rows
'<group> (region unspecified)' so they aren't read as a distinct organ (mirrors
--expand-lines for cell types). Roll-up groups live in tissue_categories.yaml
(data, extensible); Peripheral Nervous System is deliberately NOT under CNS.

Coverage Stats

5493 of 6875 relevant lines covered (79.9%)

0.8 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	27296752625.1	10 Jun 2026 06:21PM UTC	29	79.9	GitHub Action Run

pirl-unc / hitlist / 27296752625
80%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Jobs

Source Files on build 27296752625

pirl-unc / hitlist / 27296752625 80%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Jobs

Source Files on build 27296752625

pirl-unc / hitlist / 27296752625
80%

README BADGES
x