27230396903
17%

Ran 09 Jun 2026 07:28PM UTC

Jobs 1

Files 82

Run time 1min

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Committed 09 Jun 2026 07:26PM UTC coverage: 16.928% (+0.7%) from 16.263%

Build # 27230396903

Build Type

push

github

Committed by

web-flow

Commit Message

Changes related to FAIRmat 1 final PM sprint (#170)

* tweaking atom type handling and bibliography handling for oasisb example

* iso3_city_firstauthor naming information collected, starting mtex.h5 conversion run-through

* remove NeXus/MTex parser as this one has been updated and will be maintained via the pynxtools-microstructure plugin

* proper return values when file already exists and using logger

* reorganize location of the code for examples related to data ingestion studies, skeleton code for parsing, to be modified still from pynxtools-apm and pynxtools-microstructure, spellchecking

* spellchecking minor

* fixing batch_process queue, next steps i) test and run with msa, emd, dm2, dm3, dm4, iii) go to images

* explicit chunking for all parsers were applicable

* explicit chunking for all parsers were applicable

---------

Co-authored-by: mkuehbach <markus.kuehbach@physik.hu-berlin.de>

Coverage Stats

37 of 171 new or added lines in 19 files covered. (21.64%)

31 existing lines in 11 files now uncovered.

928 of 5482 relevant lines covered (16.93%)

0.17 hits per line

Uncovered Changes

Lines	Coverage	∆	File
53	11.64	0.16%	src/pynxtools_em/parsers/rsciio_velox.py
26	13.61	0.32%	src/pynxtools_em/parsers/rsciio_gatan.py
6	16.33	0.35%	src/pynxtools_em/parsers/image_tiff_fei_legacy.py
6	15.33	0.47%	src/pynxtools_em/parsers/image_tiff_zeiss.py
6	21.62	2.87%	src/pynxtools_em/utils/nx_atom_types.py
5	12.73	0.34%	src/pynxtools_em/parsers/image_png_protochips.py
5	15.97	0.58%	src/pynxtools_em/parsers/image_tiff_point_electronic.py
5	13.89	0.51%	src/pynxtools_em/parsers/image_tiff_tfs.py
5	8.23	0.28%	src/pynxtools_em/parsers/nxs_nion.py
4	17.07	0.54%	src/pynxtools_em/parsers/image_tiff_hitachi.py
4	11.05	0.44%	src/pynxtools_em/parsers/image_tiff_jeol.py
4	12.59	0.62%	src/pynxtools_em/parsers/image_tiff_tescan.py
3	17.24		src/pynxtools_em/examples/usa_evanston_yan/usa_evanston_yan_ebsd_patterns.py
2	75.0	-25.0%	src/pynxtools_em/utils/custom_logging.py

Coverage Regressions

Lines	Coverage	∆	File
9	11.64	0.16%	src/pynxtools_em/parsers/rsciio_velox.py
4	16.33	0.35%	src/pynxtools_em/parsers/image_tiff_fei_legacy.py
4	13.61	0.32%	src/pynxtools_em/parsers/rsciio_gatan.py
2	12.73	0.34%	src/pynxtools_em/parsers/image_png_protochips.py
2	17.07	0.54%	src/pynxtools_em/parsers/image_tiff_hitachi.py
2	11.05	0.44%	src/pynxtools_em/parsers/image_tiff_jeol.py
2	15.97	0.58%	src/pynxtools_em/parsers/image_tiff_point_electronic.py
2	13.89	0.51%	src/pynxtools_em/parsers/image_tiff_tfs.py
2	15.33	0.47%	src/pynxtools_em/parsers/image_tiff_zeiss.py
1	8.23	0.28%	src/pynxtools_em/parsers/nxs_nion.py
1	21.62	2.87%	src/pynxtools_em/utils/nx_atom_types.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	27230396903.1	09 Jun 2026 07:28PM UTC	82	16.93	GitHub Action Run

FAIRmat-NFDI / pynxtools-em / 27230396903
17%

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FAIRmat-NFDI / pynxtools-em / 27230396903 17%

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Markdown

Textile

RDoc

HTML

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Source Files on build 27230396903

FAIRmat-NFDI / pynxtools-em / 27230396903
17%

README BADGES
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