FAIRmat-NFDI / pynxtools-em / 27005780177

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Koch summer2026 (#169)

* refactor ger_berlin_koch example and related resources with using correct three-character iso country code

* oasisb run-through for em, adding utility code for dataset management

* additional utility code, temporarily deactivated spellchecking, remember to reactivate later

* ipynbs for batch queue

* linting

* attempt supporting python 3.14

* fixing issues related with py7zr

* data collection checked for consistence, computed all sha256 checksums, assured all copyright spdx are correct

* references

* constrain py7zr correctly

* code for unpacking for mtex queue, handling logic when we have sidecar files to distinguish

* adding refactored decompression part

* used in the unpacking queue

* used in the unpacking queue

* bump setuptools and pynxtols core

* bump versions

* linting

* spellchecking

* prepare extraction of other, i.e. non-mtex datatypes

* add note todo for tescan

* fix sidecar and solitary file ending identification logic for TESCAN

* code for inspecting a local collection of directories and files

* code for inspecting a local collection of directories and files

* code for inspecting a local collection of directories and files

* code for inspecting a local collection of directories and files

* code for inspecting a local collection of directories and files

* code for inspecting a local collection of directories and files

* cli script for hashing over a directory

* example how to check rigorously compliance with a formatting layout for text files, as it is typical in electron microscopy here exemplified for a JEOL instrument

* add missing import

* relax CM_DATA_BIT and CM_EFECT_BIT

* include charset_normalizer analysis

* inspect why the code fails for specific seemingly differently encoded text files

* inspect why the code fails for specific seemingly differently encoded text files

* inspect why the code fails for specific seemingly differently encoded text files

* inspect why the cod... (continued)

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