27186194965
84%

Ran 09 Jun 2026 05:40AM UTC

Jobs 1

Files 41

Run time 1min

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Committed 09 Jun 2026 05:37AM UTC coverage: 82.947% (+0.02%) from 82.929%

Build # 27186194965

Build Type

push

github

Committed by

web-flow

Commit Message

2.65.0: fix #235 — assembly always prepends J→C junction residue + case-insensitive contig match (#239)

Primary: no-contig/canonical fallback now always prepends the junction residue (β invariant E, α default N) so constructs aren't 1 aa short per seam; new {chain}_junction_residue_source audit + QC warning. Secondary: _extract_c_region_nt_from_contig now matches case-insensitively (lowercase vdj_nt vs uppercase CellRanger contigs) — was silently forcing no_contig for every clone. Golden full-chain + case-insensitivity regression tests. Closes #235.

Coverage Stats

10122 of 12203 relevant lines covered (82.95%)

0.83 hits per line

Coverage Regressions

Lines	Coverage	∆	File
96	92.68	0.06%	assemble.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	python-3.12 - 27186194965.1	09 Jun 2026 05:40AM UTC	41	82.95	GitHub Action Run

pirl-unc / tcrsift / 27186194965
84%

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pirl-unc / tcrsift / 27186194965 84%

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pirl-unc / tcrsift / 27186194965
84%

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