27093485414
77%

Ran 07 Jun 2026 01:09PM UTC

Jobs 1

Files 35

Run time 1min

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Committed 07 Jun 2026 01:08PM UTC coverage: 71.478% (+0.1%) from 71.363%

Build # 27093485414

Build Type

push

github

Committed by

web-flow

Commit Message

Harden vital-organ MS safety screen against false matches (tsarina#76) (#98)

The healthy-tissue MS screen flagged vital-organ off-targets with a bare
substring keyword set {brain, cerebell, cns, cortex, heart, lung, liver,
pancrea}. Two robustness gaps:

- "cortex" matched non-CNS cortices (adrenal/renal/ovarian/lymph-node
  cortex), mislabeling them as brain.
- naive "in" matching is fragile ("liver" in "deliver";
  bare "medulla" would match the non-vital adrenal/renal medulla).

Replace with a layered matcher:
- exact-name set derived from tiers.SAFETY_TISSUE_GROUPS +
  VITAL_TISSUE_MS_NAMES, so the MS screen can't drift from the RNA-side
  safety vocabulary;
- an exhaustive stem set (brain subregions + heart/cardiac/myocard,
  lung/pulmonar, hepat, pancrea/islet) matched as substrings, with
  short/ambiguous stems (cns, liver, pons) word-boundary anchored;
- "cortex" treated as CNS unless qualified by a non-CNS organ
  (inclusive bias: a missed vital-organ hit is worse than an over-flag).

Add a drift guard test asserting every SAFETY_TISSUE_GROUPS /
VITAL_TISSUE_MS_NAMES entry is matched, plus true/false parametrized
cases covering spelling variants and the substring traps.

Coverage Stats

2491 of 3485 relevant lines covered (71.48%)

0.71 hits per line

Coverage Regressions

Lines	Coverage	∆	File
3	96.2	0.82%	ms_evidence.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	27093485414.1	07 Jun 2026 01:09PM UTC	35	71.48	GitHub Action Run

pirl-unc / tsarina / 27093485414
77%

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