26971093406
79%

Ran 04 Jun 2026 06:23PM UTC

Jobs 1

Files 29

Run time 1min

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Committed 04 Jun 2026 06:21PM UTC coverage: 76.789% (+0.04%) from 76.754%

Build # 26971093406

Build Type

push

github

Committed by

web-flow

Commit Message

v1.30.57: split cell_name into cell_line_name + cell_type (#261 stage 2) (#268)

Wire the stage-1 parse_cell_name into classify_ms_row so both
observation producers (scanner + supplement) emit a new build-time
cell_type column and a cleaned cell_line_name:

- cell_type (NEW): the tissue/cell-type part ('B cell', 'Myeloid cell'),
  '' when unknown
- cell_line_name: now strips the '<line>-<cell_type>' hybrid suffix
  ('K562-Myeloid cell' -> 'K562') and canonicalizes known synonyms
  ('HeLa cells' -> 'HeLa'). Falls back to the parser's raw line input,
  then the original string, so a cell-line row whose line isn't in the
  registry never loses its identifier (no #260 line-count regression).

parse_cell_name runs inside the lru_cached classify_ms_row, so it's
evaluated once per unique row-tuple, not per row. Mono-allelic
detection still runs on the raw cell_name (unchanged).

Stage 3 (pmhc --cell-type filtering) remains out of scope.

Coverage Stats

4711 of 6135 relevant lines covered (76.79%)

0.77 hits per line

Coverage Regressions

Lines	Coverage	∆	File
34	91.7	0.08%	curation.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	26971093406.1	04 Jun 2026 06:23PM UTC	29	76.79	GitHub Action Run

pirl-unc / hitlist / 26971093406
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