26969154057
81%

Ran 04 Jun 2026 05:48PM UTC

Jobs 4

Files 40

Run time 1min

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Committed 04 Jun 2026 05:44PM UTC coverage: 79.831% (+0.03%) from 79.802%

Build # 26969154057

Build Type

push

github

Committed by

web-flow

Commit Message

2.30.0: fix four silent QC/config footguns (#167/#168/#170/#172) (#174)

Fixes four silent footgun bugs: dead min_cd3_reads gate (#172, now defaults to 3), silent min_mito_pct floor (#168, default 2.0 kept but now logged/warned), fdr_tiers silently inert under threshold tiering (#170, now warns once), and hardcoded tier1 in method-recovery (#167, now strictest populated tier). Adds unit + behavioral tests for the extracted helpers.

Coverage Stats

8882 of 11126 relevant lines covered (79.83%)

3.19 hits per line

Coverage Regressions

Lines	Coverage	∆	File
151	56.53	0.15%	cli.py
21	88.92	-0.33%	loader.py
8	95.65	0.0%	config.py
2	90.56	0.49%	filter.py
1	95.83	0.12%	phenotype.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	python-3.10 - 26969154057.1	04 Jun 2026 05:49PM UTC	40	79.82	GitHub Action Run
2	python-3.9 - 26969154057.2	04 Jun 2026 05:49PM UTC	40	79.78	GitHub Action Run
3	python-3.11 - 26969154057.3	04 Jun 2026 05:48PM UTC	40	79.82	GitHub Action Run
4	python-3.12 - 26969154057.4	04 Jun 2026 05:48PM UTC	40	79.82	GitHub Action Run

pirl-unc / tcrsift / 26969154057
81%

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pirl-unc / tcrsift / 26969154057 81%

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Textile

RDoc

HTML

Rst

Coverage Regressions

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Source Files on build 26969154057

pirl-unc / tcrsift / 26969154057
81%

README BADGES
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