26841812559
82%

Ran 02 Jun 2026 07:07PM UTC

Jobs 4

Files 34

Run time 1min

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Committed 02 Jun 2026 07:04PM UTC coverage: 81.522% (+0.09%) from 81.433%

Build # 26841812559

Build Type

push

github

Committed by

web-flow

Commit Message

2.19.0: gene signatures as selection methods, wired into run (#140)

Signed gene signatures (genes_up/genes_down, focal/broad panels) scored as z-score of log(1+TPM) then mean across genes; gap/otsu/quantile cutoffs (gap returns none when no distinct cluster). Panels: Proliferation/Cytolytic/Differentiated (+Broad), TumorReactive, AntigenExperienced, AIM/AIMBroad, CirculatingMemory. selection.signatures wires them into run (scored on adata.X, injected as synthetic methods feeding the rules). Strict: a missing signature gene errors (no silent partial scoring). No context guards — caveats are documentation.

Coverage Stats

7937 of 9736 relevant lines covered (81.52%)

3.26 hits per line

Coverage Regressions

Lines	Coverage	∆	File
85	58.29	0.45%	cli.py
7	94.87	-1.83%	signature_methods.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	python-3.12 - 26841812559.1	02 Jun 2026 07:07PM UTC	34	81.51	GitHub Action Run
2	python-3.9 - 26841812559.2	02 Jun 2026 07:07PM UTC	34	81.47	GitHub Action Run
3	python-3.10 - 26841812559.3	02 Jun 2026 07:07PM UTC	34	81.51	GitHub Action Run
4	python-3.11 - 26841812559.4	02 Jun 2026 07:07PM UTC	34	81.51	GitHub Action Run

pirl-unc / tcrsift / 26841812559
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pirl-unc / tcrsift / 26841812559 82%

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pirl-unc / tcrsift / 26841812559
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