26793769624
84%

Ran 02 Jun 2026 02:03AM UTC

Jobs 4

Files 32

Run time 1min

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Committed 02 Jun 2026 02:01AM UTC coverage: 79.797% (+0.08%) from 79.713%

Build # 26793769624

Build Type

push

github

Committed by

web-flow

Commit Message

2.10.0: run/assemble --cellranger-dir + --sample-name-from (closes #124) (#131)

load_contigs gains sample_name_from={parent,grandparent,sheet} + cellranger_dir shorthand; threaded through assemble_full_sequences and wired to run/assemble CLI + AssembleConfig. Fixes CellRanger per_sample_outs/{sample}/vdj_t layout collapsing every sample to vdj_t. Picks up and finishes stashed library work; +17 tests. Closes #124.

Coverage Stats

7477 of 9370 relevant lines covered (79.8%)

3.19 hits per line

Coverage Regressions

Lines	Coverage	∆	File
170	54.2	0.07%	cli.py
97	92.03	0.21%	assemble.py
15	90.91	0.68%	config.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	python-3.9 - 26793769624.1	02 Jun 2026 02:04AM UTC	32	79.74	GitHub Action Run
2	python-3.12 - 26793769624.2	02 Jun 2026 02:04AM UTC	32	79.79	GitHub Action Run
3	python-3.10 - 26793769624.3	02 Jun 2026 02:04AM UTC	32	79.79	GitHub Action Run
4	python-3.11 - 26793769624.4	02 Jun 2026 02:03AM UTC	32	79.79	GitHub Action Run

pirl-unc / tcrsift / 26793769624
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pirl-unc / tcrsift / 26793769624 84%

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pirl-unc / tcrsift / 26793769624
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