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pirl-unc / tcrsift / 26793769624
84%

Build:
DEFAULT BRANCH: main
Ran 02 Jun 2026 02:03AM UTC
Jobs 4
Files 32
Run time 1min
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02 Jun 2026 02:01AM UTC coverage: 79.797% (+0.08%) from 79.713%
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2.10.0: run/assemble --cellranger-dir + --sample-name-from (closes #124) (#131)

load_contigs gains sample_name_from={parent,grandparent,sheet} + cellranger_dir shorthand; threaded through assemble_full_sequences and wired to run/assemble CLI + AssembleConfig. Fixes CellRanger per_sample_outs/{sample}/vdj_t layout collapsing every sample to vdj_t. Picks up and finishes stashed library work; +17 tests. Closes #124.

7477 of 9370 relevant lines covered (79.8%)

3.19 hits per line

Coverage Regressions

Lines Coverage ∆ File
170
54.2
0.07% cli.py
97
92.03
0.21% assemble.py
15
90.91
0.68% config.py
Jobs
ID Job ID Ran Files Coverage
1 python-3.9 - 26793769624.1 02 Jun 2026 02:04AM UTC 32
79.74
GitHub Action Run
2 python-3.12 - 26793769624.2 02 Jun 2026 02:04AM UTC 32
79.79
GitHub Action Run
3 python-3.10 - 26793769624.3 02 Jun 2026 02:04AM UTC 32
79.79
GitHub Action Run
4 python-3.11 - 26793769624.4 02 Jun 2026 02:03AM UTC 32
79.79
GitHub Action Run
Source Files on build 26793769624
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  • Changed 3
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  • Coverage Changed 3
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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