openvax / isovar / 25857611734

94%

master: 94%

Pull #183

github

Add IsovarReadPhasing adapter for RNA-read variant phasing

Exposes IsovarResult.phased_variants_in_supporting_reads through a
narrow has_evidence/partners_in_cis interface, suitable as a read-
phasing source for varcode's germline-aware effect prediction.

Distinct from VarcodeAdapter (which implements the full
IsovarAssemblyProvider protocol): IsovarReadPhasing answers only the
phasing question and so does not require assembled contigs or mutant
transcripts.

Closes #182.

15 of 15 new or added lines in 2 files covered. (100.0%)

2555 of 2730 relevant lines covered (93.59%)

0.94 hits per line