25820006442
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Ran 13 May 2026 07:03PM UTC

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Build # 25820006442

Build Type

push

github

Committed by

iskandr

Commit Message

Rewrite germline doc with concrete Python; reorder feature guides

docs/germline.md
- Lead with a runnable side-by-side example: same somatic variant
  evaluated without germline (Substitution p.L159M) vs. with a
  same-codon germline (PhaseAmbiguousEffect ?p.L159M, outcomes
  haplotype-A p.S159T / haplotype-B p.L159M). Real CFTR coordinates
  matching the test fixture so the numbers stay honest.
- Mark the feature as niche up front. Most pipelines don't need it.
- Trim verbose backstory; consolidate Construction routes; keep
  Completeness table, LOH, composition, build-mismatch, limitations.

mkdocs.yml + README.md
- Reorder feature guides by usage frequency:
  effect_annotation -> genotype -> transforms -> csv -> errors -> germline.
- Add the previously-missing transforms entry to the README.

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