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axondeepseg / axondeepseg / 25389640169
79%

Build:
DEFAULT BRANCH: master
Ran 05 May 2026 04:55PM UTC
Jobs 3
Files 22
Run time 1min
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05 May 2026 04:44PM UTC coverage: 79.755% (-0.2%) from 79.931%
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Update conda environment creation to include pip (#978)

* Add --allow-large-images flag to handle images exceeding PIL pixel limit (#974)

* feat - Add pixel size field to model cards and display it in --list

* Update SEM pixel sizes and drop average from display

* Add --allow-large-images flag to handle images exceeding PIL pixel limit

* Fix large image handling in GUI and macOS subprocess workers

- Add confirmation popup in napari when image exceeds PIL pixel limit
- Set ADS_ALLOW_LARGE_IMAGES env var so macOS spawned subprocesses inherit the raised limit
- Guard against @logger.catch swallowing IOError and cascading into a second crash
- Document --allow-large-images flag in CLI reference

---------

Co-authored-by: Mathieu Boudreau, PhD <emb6150@gmail.com>
Co-authored-by: Armand Collin <83031821+hermancollin@users.noreply.github.com>

* Update conda environment creation to include pip

Added pip installation to conda environment creation.

* Fix coveralls

* Try alternative URL for coveralls darwin binaries

* Try old coveralls python method

* Remove coveralls report push on macintel

---------

Co-authored-by: Youssef Laatar <laatarjo@gmail.com>
Co-authored-by: Armand Collin <83031821+hermancollin@users.noreply.github.com>

50 of 63 new or added lines in 4 files covered. (79.37%)

1887 of 2366 relevant lines covered (79.75%)

2.25 hits per line

Uncovered Changes

Lines Coverage ∆ File
6
89.03
-1.81% AxonDeepSeg/ads_utils.py
4
60.4
0.06% AxonDeepSeg/ads_napari/_widget.py
2
97.14
-2.86% AxonDeepSeg/apply_model.py
1
90.16
-0.51% AxonDeepSeg/segment.py
Jobs
ID Job ID Ran Files Coverage
1 windows-latest - 25389640169.1 05 May 2026 05:02PM UTC 22
79.67
GitHub Action Run
2 ubuntu-latest - 25389640169.2 05 May 2026 04:55PM UTC 22
65.3
GitHub Action Run
3 macos-latest - 25389640169.3 05 May 2026 05:04PM UTC 22
79.75
GitHub Action Run
Source Files on build 25389640169
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  • Changed 4
  • Source Changed 4
  • Coverage Changed 4
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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