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pirl-unc / hitlist / 25170780743
80%

Build:
DEFAULT BRANCH: main
Ran 30 Apr 2026 02:24PM UTC
Jobs 1
Files 26
Run time 1min
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30 Apr 2026 02:22PM UTC coverage: 70.223% (+0.03%) from 70.19%
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v1.30.11: exclude_class_label_suspect filter on load_observations / export (#182) (#196)

Adds a one-line opt-out for IEDB class-label drift. v1.30.0's
mhc_class_label_suspect flag tagged rows where the bimodal length
distribution disagrees with the curated class (class II ≤10aa or
class I ≥18aa) but consumers still had to roll their own filter.

API surface:
- load_observations(..., exclude_class_label_suspect=True)
- load_binding(..., exclude_class_label_suspect=True)
- load_ms_observations(..., exclude_class_label_suspect=True)
- load_all_evidence(..., exclude_class_label_suspect=True)
- generate_observations_table(..., exclude_class_label_suspect=True)
- generate_ms_observations_table(..., exclude_class_label_suspect=True)
- hitlist export observations --exclude-class-label-suspect

The filter pulls mhc_class + peptide into the read columns whenever
it's enabled — even if the caller projects with columns=["pmid"] —
so the suspect flag can be computed before trimming back to the
caller's projection. No behavior change unless explicitly opted in.

3521 of 5014 relevant lines covered (70.22%)

0.7 hits per line

Coverage Regressions

Lines Coverage ∆ File
80
55.01
0.07% cli.py
73
81.46
-0.11% export.py
8
93.94
0.29% observations.py
Jobs
ID Job ID Ran Files Coverage
1 25170780743.1 30 Apr 2026 02:24PM UTC 26
70.22
GitHub Action Run
Source Files on build 25170780743
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  • Coverage Changed 3
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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