25062385762
80%

Ran 28 Apr 2026 03:36PM UTC

Jobs 1

Files 25

Run time 1min

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Committed 28 Apr 2026 03:35PM UTC coverage: 68.436% (+0.1%) from 68.336%

Build # 25062385762

Build Type

push

github

Committed by

web-flow

Commit Message

v1.29.5: Fix report KeyError + shared CLI banner + informative subgroup help (#178)

Three things triggered by user reports against v1.29.4:

1. **Fix `hitlist report` crash**. ``generate_report`` indexed
   ``entry['label']`` against the pmid_overrides YAML, but ``label:`` was
   renamed to ``study_label:`` in v1.7.0 and the new schema only carries
   the new key — so any built parquet whose first PMID landed in the
   overrides raised ``KeyError: 'label'``. Fall back to ``study_label``
   (and ``.get`` with empty-string default in case future entries omit
   it). Regression test added.

2. **Shared version banner**. New ``_print_banner()`` prints
   ``hitlist v<version>`` + ``observations.parquet: built / NOT BUILT``
   above subgroup help. Threaded into the no-subcommand-given path of
   every group dispatcher (``data``, ``build``, ``export``, ``qc``,
   ``pmhc``) plus the bare ``hitlist`` invocation.

3. **Informative subgroup help**. Replaced the terse one-liners
   (``Usage: hitlist pmhc {query}``, etc.) with a full ``argparse``
   help dump, so users see what each subcommand does and what args it
   takes. Wired via ``set_defaults(_subgroup_parser=…)`` so each
   dispatcher can recover its own parser instance from ``args``.
   Added a description on ``hitlist pmhc`` since "{query}" alone said
   nothing about the actual workflow.

Coverage Stats

3198 of 4673 relevant lines covered (68.44%)

0.68 hits per line

Coverage Regressions

Lines	Coverage	∆	File
158	51.28	-0.45%	cli.py
7	84.77	5.28%	report.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	25062385762.1	28 Apr 2026 03:36PM UTC	25	68.44	GitHub Action Run

pirl-unc / hitlist / 25062385762
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