pirl-unc / hitlist / 25031126243

Build # 25031126243

Build Type

push

github

Committed by web-flow

Commit Message

v1.26.0: Add `hitlist build` top-level group (CLI refactor PR 2) (#168)

Promotes the three artifact-building commands out of `data` into a
canonical `build` namespace whose name matches what they do:

- `hitlist build observations`  ← was `hitlist data build`
- `hitlist build index`         ← was `hitlist data index`
- `hitlist build proteomes`     ← was `hitlist data fetch-proteomes`

`data` now stays focused on its actual job: registering, fetching, and
inspecting external dataset *inputs*.

The legacy paths still parse and run identically (handlers shared via
extracted `_add_build_*_args` helpers so flags can never drift), but
emit a stderr deprecation notice on every invocation pointing at the
new path.  Will be removed in v2.0.

Tests:
- 6 new tests under tests/test_cli_build_group.py
  - argparse routes new paths into Namespace correctly
  - legacy and canonical produce identical flag-derived attributes
  - legacy invocation prints deprecation notice + still calls handler
  - dispatcher reaches the same handlers from either entry point

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