openvax / pyensembl / 24853527829

84%

master: 83%

Build Type

Pull #332

github

Committed by iskandr

Commit Message

Fix #297: parse transcript_support_level with parenthetical suffix

Recent Ensembl releases may emit values like
`transcript_support_level "1 (assigned to previous version 5)"`, causing
`int(tsl)` in `Genome.transcript_by_id` to crash once gtfparse no longer
strips internal whitespace from attribute values. Extract the leading
token and coerce it to an int when numeric, otherwise None.

Pull Request Pull Request #332: Fix #297: tolerate parenthetical suffix in transcript_support_level

Coverage Stats

9 of 9 new or added lines in 2 files covered. (100.0%)

49 existing lines in 1 file now uncovered.

1347 of 1613 relevant lines covered (83.51%)

3.34 hits per line