24605870471
74%

Ran 18 Apr 2026 01:38PM UTC

Jobs 1

Files 30

Run time 1min

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Committed 18 Apr 2026 01:37PM UTC coverage: 35.049% (+1.5%) from 33.543%

Build # 24605870471

Build Type

push

github

Committed by

web-flow

Commit Message

v0.6.1: warn when --include-binding-assays is a no-op (tsarina#4) (#8)

Partial fix for tsarina#4. The fast default path (cached observations
parquet) cannot honor --include-binding-assays because hitlist purges
binding-assay rows at build time (hitlist/builder.py). The guard at
cli_hits.py:368 looked like it was doing something but was always
filtering an empty set.

Behavior:
- Passing --include-binding-assays on the cached path now prints an
  explicit stderr warning pointing users at --iedb / --cedar (raw-CSV
  scan, which does see binding rows) and linking hitlist#47.
- --help text on the flag now states the limitation up front.
- The override path (--iedb / --cedar) is unaffected — the flag has
  always worked correctly there.

The real fix lands when hitlist#47 ships a separate binding_assays
parquet; then this path can switch to load_all_evidence() and drop
the warning.  Issue stays open until then.

Tests: +2 (help-text assertion + in-process handler call verifying
the warning actually fires via capsys).  148 total passing.

Coverage Stats

613 of 1749 relevant lines covered (35.05%)

0.35 hits per line

Coverage Regressions

Lines	Coverage	∆	File
65	38.81	13.18%	cli_hits.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	24605870471.1	18 Apr 2026 01:38PM UTC	30	35.05	GitHub Action Run

pirl-unc / tsarina / 24605870471
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