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Refactor misc.py phase 4: run-engine integration into run_utils.py (#355)

* maint #344 extract run-engine integration from misc.py into run_utils.py

Create hklpy2/run_utils.py with ConfigurationRunWrapper, creator_from_config,
get_run_orientation, and list_orientation_runs.  Remove all four from
misc.py (no re-export shim).  Remove now-unused imports from misc.py:
sys, tqdm, pandas, Device, Iterator.  Update __init__.py and test files
to import from run_utils directly.

Agent: OpenCode (claudesonnet46)

* docs #344 fix stale hklpy2.misc references in docs and autosummary

Remove ConfigurationRunWrapper from misc.py autosummary (it moved to
run_utils.py). Update code examples in docs/source/guides/diffract.rst
to import ConfigurationRunWrapper from hklpy2.run_utils.

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