openvax / isovar / 24491131187

93%

master: 94%

Pull #158

github

Document assembly assumptions: exact-match and monotonic coverage

Add module docstrings to assembly.py and variant_sequence.py documenting
that the assembly requires exact sequence matches (breaks with long-read
error rates) and that coverage trimming assumes monotonic decay (breaks
with splice-junction reads).

Add a note to README's Sequencing Recommendations section.

Fixes #150

1 of 1 new or added line in 1 file covered. (100.0%)

2061 of 2212 relevant lines covered (93.17%)

2.8 hits per line