23571247686
91%

Ran 26 Mar 2026 12:28AM UTC

Jobs 1

Files 32

Run time 1min

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Committed 26 Mar 2026 12:28AM UTC coverage: 87.996% (+16.1%) from 71.905%

Build # 23571247686

Build Type

push

github

Committed by

mikedarcy

Commit Message

tests: push coverage from 76% to 92% via new tests and targeted pragmas

  - Add ~750 lines of new tests across test_tools.py (catalog, vocabulary, and
    annotation error paths and feature coverage), test_rag_crawler.py (new file,
    GitHubCrawler + RAGDocsManager unit tests via pytest-httpx), and
    test_plugin_smoke.py (new file).

  - Add [report] exclude_lines to .coveragerc so abstract VectorStore stubs
    (raise NotImplementedError) are excluded globally.

  - Add # pragma: no cover to CLI-only infrastructure (server._init_logging,
    server.main, PgVectorStore, ChromaVectorStore chroma_url branch,
    audit logger syslog branch) that cannot be exercised without live services
    or platform-specific sockets.

  - Remove hard Windows platform check from test_rag_integration.py; pgvector
    tests now skip gracefully on any platform where initdb is not on PATH,
    allowing them to run on Windows with PostgreSQL installed.

  Total: 308 tests passing, 6 skipped (pgvector, no initdb on PATH).

Update workplan-deriva-mcp-core.md with current status and additional testing detail.

Run Details

1730 of 1966 relevant lines covered (88.0%)

0.88 hits per line

Uncovered Existing Lines

Lines	Coverage	∆	File
1	97.44	-1.23%	src/deriva_mcp_core/plugin/api.py
1	74.07	-0.93%	src/deriva_mcp_core/rag/data.py
1	76.99	-0.49%	src/deriva_mcp_core/rag/__init__.py
1	98.51	-1.49%	src/deriva_mcp_core/rag/schema.py
1	38.69	9.22%	src/deriva_mcp_core/rag/store.py
1	99.7	42.6%	src/deriva_mcp_core/tools/annotation.py
1	83.0	13.61%	src/deriva_mcp_core/tools/catalog.py
1	74.8	-0.4%	src/deriva_mcp_core/tools/entity.py
1	76.09	-1.19%	src/deriva_mcp_core/tools/hatrac.py
1	80.0	-1.82%	src/deriva_mcp_core/tools/query.py
1	95.0	-0.92%	src/deriva_mcp_core/tools/schema.py
1	97.22	18.92%	src/deriva_mcp_core/tools/vocabulary.py
2	91.43	51.13%	src/deriva_mcp_core/rag/docs.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	23571247686.1	26 Mar 2026 12:28AM UTC	32	88.0	GitHub Action Run

informatics-isi-edu / deriva-mcp-core / 23571247686
91%

README BADGES
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informatics-isi-edu / deriva-mcp-core / 23571247686 91%

README BADGES x

Markdown

Textile

RDoc

HTML

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Uncovered Existing Lines

Jobs

Source Files on build 23571247686

informatics-isi-edu / deriva-mcp-core / 23571247686
91%

README BADGES
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