23458856916
89%

Ran 23 Mar 2026 08:40PM UTC

Jobs 1

Files 36

Run time 1min

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Committed 23 Mar 2026 08:07PM UTC coverage: 89.349% (+0.02%) from 89.325%

Build # 23458856916

Build Type

push

github

Committed by

iskandr

Commit Message

General trailing-MHC prefix strip, unit tests, v3.15.0

Move trailing-MHC strip ({prefix}MHC-{gene}) to run BEFORE normal
prefix scanning so it works even when the base prefix (e.g., "Mana")
is a valid 4-letter match. Remove ManaMHC as explicit other prefix —
the general mechanism now handles it.

Add 50 unit tests covering:
- Trailing-MHC strip (ManaMHC-DAB*01, case insensitivity, no false
  positives on HLA-A*02:01 or MhcTyal-DAB1)
- 12 new species lookups (Cape, Rhsi, Mygl, Clgl, Odhe, Loaf, etc.)
- Missing prefix alternatives (Ppa, Ptr, Gbb, Gbg, Ggg, Caur)
- Cetacean class II inheritance (DQA1, DQB1, DOA, DOB, DPB1 etc.)
- Missing genes (salmon UGA/UHA/ZE, iguana UB, koala UH, horse DQA/DQB/DRB)

Version bump: 3.15.0. All 51,711 tests pass.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

Coverage Stats

3129 of 3502 relevant lines covered (89.35%)

0.89 hits per line

Coverage Regressions

Lines	Coverage	∆	File
11	88.64	0.15%	species.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	23458856916.1	23 Mar 2026 08:40PM UTC	36	89.35	GitHub Action Run

pirl-unc / mhcgnomes / 23458856916
89%

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pirl-unc / mhcgnomes / 23458856916 89%

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