21262765240
70%

Ran 22 Jan 2026 07:54PM UTC

Jobs 4

Files 22

Run time 1min

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Committed 22 Jan 2026 07:52PM UTC coverage: 64.517% (+0.5%) from 64.048%

Build # 21262765240

Build Type

push

github

Committed by

iskandr

Commit Message

Add safe calculation utilities and improve input validation

- Add safe_divide, safe_percentage, safe_mode utilities to validation.py
  to prevent division-by-zero errors across the codebase
- Add validate_cdr3_dataframe for bulk CDR3 sequence validation
- Fix division-by-zero issues in filter.py, clonotype.py, til.py
- Replace fragile .mode().iloc[0] pattern with safe_mode() helper
- Fix TIL matching to exclude both "_" and "" empty CDR3 identifiers
- Document tier threshold parameters (configurable defaults)
- Rename clone_id to CDR3ab for consistency across modules
- Bump version to 0.2.3

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Run Details

2631 of 4078 relevant lines covered (64.52%)

2.58 hits per line

Uncovered Existing Lines

Lines	Coverage	∆	File
10	94.01	-1.77%	clonotype.py
12	40.76	0.0%	gex.py
19	89.27	0.93%	filter.py
47	75.0	0.71%	loader.py
59	61.57	-3.38%	validation.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	python-3.9 - 21262765240.1	22 Jan 2026 07:54PM UTC	22	64.48	GitHub Action Run
2	python-3.12 - 21262765240.2	22 Jan 2026 07:54PM UTC	22	64.5	GitHub Action Run
3	python-3.10 - 21262765240.3	22 Jan 2026 07:54PM UTC	22	64.5	GitHub Action Run
4	python-3.11 - 21262765240.4	22 Jan 2026 07:54PM UTC	22	64.5	GitHub Action Run

pirl-unc / tcrsift / 21262765240
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pirl-unc / tcrsift / 21262765240 70%

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