broadinstitute / viral-classify / 20865818841

66%

master: 66%

push

github

Use ReadIdStore.add_from_readlist for file-based read ID loading

Replace manual file reading pattern with the new add_from_readlist method
from viral-core 2.5.20 in four locations:
- deplete_bmtagger_bam
- deplete_blastn_bam
- deplete_minimap2_bam
- Kmc.filter_reads

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

242 of 403 branches covered (60.05%)

Branch coverage included in aggregate %.

1654 of 2450 relevant lines covered (67.51%)

0.68 hits per line