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Clinical-Genomics / cg / 19230877861
78%

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DEFAULT BRANCH: master
Ran 10 Nov 2025 12:03PM UTC
Jobs 1
Files 879
Run time 312min
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10 Nov 2025 12:00PM UTC coverage: 86.36% (+0.06%) from 86.301%
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DEV - Make Nallo startable using the AnalysisStarter (#4674)(minor)

## Description
Make Nallo workflow use the AnalysisStarter class using dev commands
To be merged with https://github.com/Clinical-Genomics/servers/pull/1731

### Added

- Sample sheet creator
- Params file creator
- Tracker
- Nallo to AnalysisStarterFactory and ConfiguratorFactory
- dev commands (config-case, run, start, start-available)
- SampleSheetCreator protocol

---------

Co-authored-by: islean <isak.ohlsson.angnell@gmail.com>
Co-authored-by: Linnéa Löfdahl <linnea.lofdahl@scilifelab.se>
Co-authored-by: Rasmus Burge <80392398+RasmusBurge-CG@users.noreply.github.com>
Co-authored-by: Isak Ohlsson Ångnell <40887124+islean@users.noreply.github.com>

225 of 231 new or added lines in 19 files covered. (97.4%)

28073 of 32507 relevant lines covered (86.36%)

0.86 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
87.5
cg/services/analysis_starter/configurator/file_creators/nextflow/sample_sheet/protocol.py
1
98.39
0.08% cg/services/analysis_starter/factories/starter_factory.py
4
96.3
-3.7% cg/services/analysis_starter/factories/configurator_factory.py
Jobs
ID Job ID Ran Files Coverage
1 19230877861.1 10 Nov 2025 12:03PM UTC 879
86.36
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Source Files on build 19230877861
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Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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