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openbraininstitute / libsonata / 15773002109
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DEFAULT BRANCH: master
Ran 20 Jun 2025 06:48AM UTC
Jobs 1
Files 19
Run time 1min
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20 Jun 2025 06:46AM UTC coverage: 92.694% (+0.08%) from 92.61%
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compartment sets 2: reports (#7)

Compartment sets require also changes for parsing and validation of `simulation_config.json`. This PR does that in addition to taking care of all the final changes in the spec. The final spec is here:

https://sonata-extension.readthedocs.io/en/latest/sonata_report.html#fine-grained-compartment-report

## Changelog:

- new `Report::Type::compartment_set`: this disallows and (sets to `invalid` in the final product) the `sections` and `compartments` lines since they lose meaning if we use the `compartment_sets.json` file. 
- add a new compartment_sets report in `simulation_config.json` for testing.
- add 2 tests to verify that we throw an error if `sections` or `compartments` are present
- add new entry in `Report` to specify which `compartment_set` we want to use
- order by gid (preserving the list ordering otherwise)

33 of 33 new or added lines in 2 files covered. (100.0%)

2360 of 2546 relevant lines covered (92.69%)

39.49 hits per line

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ID Job ID Ran Files Coverage
1 15773002109.1 20 Jun 2025 06:48AM UTC 19
92.69
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