FAIRmat-NFDI / pynxtools / 13332803056

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push

github

Committed by web-flow

Commit Message

No inner sections (#525)

* use pynxtools.nomad.schema.Root

* not using inner sections

* fix for doc links if name contains _

* fix format

* linting

* fixing tests

* fixing mime-type for WSL

* fix for handling raw files in subdirectories

* use references in steps, and results in NexusMeasurement

* make nexus attributes searchable by importing them to NOMAD as Quantities

* temporary fix for boolean array as signals or axes - show first element as the field value

* handling arrays of strings

* handling attribute if it is an array of numbers

* fix for handling bool (arrays) coming from hdf5

* add array size and ndim as attributes (#537)

* field statistics are now searchable quantities themselves

* NexusBaseSection for registering NeXUs Group instance names as searchable quantity <name>

* fix for registering stats

* searcable __name for variadic quantities

* bringing statistic definitions to a common place

* Update src/pynxtools/nomad/parser.py

Co-authored-by: Lukas Pielsticker <50139597+lukaspie@users.noreply.github.com>

* Update src/pynxtools/nomad/schema.py

Co-authored-by: Lukas Pielsticker <50139597+lukaspie@users.noreply.github.com>

* use mapping instead of if/elif-s

* manage std instead of var

* fix for ganareting __name/stat quantities

* fix for handling attributes

* ruffing

* ruffing

* linting

* fix for tests

* adjust to nomad's python requirement

---------

Co-authored-by: GinzburgLev <ginzburglev95@gmail.com>
Co-authored-by: Laurenz Rettig <53396064+rettigl@users.noreply.github.com>
Co-authored-by: Lukas Pielsticker <50139597+lukaspie@users.noreply.github.com>

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