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Refactor CLI options (#115)

* Refactor CLI options

Why these changes are being introduced:
* Refactor CLI options so that each CLI command only receives the necessary parameters.

How this addresses that need:
* Update CLI commands to only add necessary parameters for each command
* Refactor Workflow class to only require batch_id for instantiation
* Create metadata_mapping_path, s3_bucket, and output_queue properties
* Refactor collection_handle and email_recipients as method args
* Update workflow fixtures to account for new class properties
* Update CLI tests to account for shifting CLI options
* Update outdated values in Workflow class unit tests and
* Remove unnecessary Workflow class unit test after class attributes are removed

Side effects of this change:
* None

* Update Pipfile.lock

* Updates based on discussion in PR #115

* Update parameter docstrings for great accuracy
* Add properties to temporary Demo workflow class

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