Clinical-Genomics / cg_lims / 12298583198
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Jobs 1
Files 214
Run time 1min
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coverage: 60.712% (-0.9%) from 61.562%
12298583198

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SMRT Link EPPs (#563)

### Added
- New EPP for creating Sample Setup CSVs
- New EPP for creating pooling calculation CSVs
- New EPP for calculating Revio pooling volumes
- New EPP for automatically setting Revio sequencing options
- New models and classes for SMRT Link CSV creation

155 of 368 new or added lines in 13 files covered. (42.12%)

81 existing lines in 7 files now uncovered.

4860 of 8005 relevant lines covered (60.71%)

0.61 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
98.4
 -0.5% cg_lims/options.py
4
63.01
 -3.16% cg_lims/get/fields.py
7
63.48
 -3.81% cg_lims/get/artifacts.py
10
54.55
 cg_lims/EPPs/files/smrt_link/run_design.py
15
53.13
 cg_lims/EPPs/files/smrt_link/sample_setup.py
48
37.66
 cg_lims/EPPs/udf/calculate/revio_pooling.py
58
26.58
 cg_lims/EPPs/udf/set/set_revio_sequencing_settings.py
70
45.74
 cg_lims/EPPs/files/smrt_link/models.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.55
 0.55% cg_lims/EPPs/files/base.py
1
98.31
 0.06% cg_lims/EPPs/udf/calculate/base.py
1
95.65
 0.41% cg_lims/EPPs/udf/set/base.py
3
98.4
 -0.5% cg_lims/options.py
7
63.48
 -3.81% cg_lims/get/artifacts.py
9
63.01
 -3.16% cg_lims/get/fields.py
59
21.64
 0.52% cg_lims/EPPs/files/sample_sheet/create_sample_sheet.py
Jobs
ID Job ID Ran Files Coverage
1 12298583198.1 214
60.71
 GitHub Action Run
Source Files on build 12298583198