Clinical-Genomics / cg_lims / 12067369128

59%

Build Type

push

github

Committed by web-flow

Commit Message

Update Calculate Amount scripts for more flexibility (#562)

Changes are needed for the new Pacbio Revio workflow but they also affect many other steps that have different types of calculate amount automations using the same script

### Changed

For script calculate_amount_ng.py:
- From options.py, "subtract_volume_option" was substituted with "subtract_volume" as it offers more flexibility
- From options.py, "preset_volume" was added so that a volume specified in the cli can be used in the calculation

For script twist_qc_amount.py:
- From options.py, "subtract_volume" was added and substitutes the hardcoded volume subtraction in the script - the value can be modified in the cli command instead.
- Its pytest test_twist_qc_amount.py was modified to reflect the added option mentioned above

Run Details

7 of 12 new or added lines in 2 files covered. (58.33%)

2 existing lines in 2 files now uncovered.

4707 of 7646 relevant lines covered (61.56%)

0.62 hits per line