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shimming-toolbox / shimming-toolbox / 11901629028
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Build:
DEFAULT BRANCH: master
Ran 18 Nov 2024 09:48PM UTC
Jobs 6
Files 51
Run time 1min
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18 Nov 2024 09:42PM UTC coverage: 91.399% (+0.07%) from 91.327%
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Automatic mask creation for MRS shimming based on voxel position  (#509)

* adding a script to create a mask to shim single voxel MRS

* I edited the 'auto_mask_mrs.py' to be compatible with 'mask.py'.

* debugging the code

* renamed the auto_mask_MRS.py to mask_mrs.py

* replacces the twixtools to spec2nii for reading twix data

* removing  unnecessary imported libraries

* modified the code based on comments on pull request #509

* minor code modifications

* some modifications to code formating

* removed overindentations

* Apply suggestions from code review

Correcting typos in the code

Co-authored-by: Alex Dastous <47249340+po09i@users.noreply.github.com>

* correcting wrong indentations

* adding a test for mrs mask creation

* replacing the type of the raw data used to create a mask for mrs shimming

* modifyin the cli test for mask generation

* adding a test for ms mask generation cli

* fixing the synatx error

* updating the setup file based on master

* fixing the test implemented for MRS mask creation

* Changing the path to the 'testing-data' based on the latest release

* Apply suggestions from code review

* Add .rda test and refactor some of the code to coding standards

---------

Co-authored-by: Alex Dastous <47249340+po09i@users.noreply.github.com>
Co-authored-by: Alexandre D'Astous <po09i@hotmail.com>

68 of 70 new or added lines in 2 files covered. (97.14%)

5154 of 5639 relevant lines covered (91.4%)

5.48 hits per line

Jobs
ID Job ID Ran Files Coverage
1 macos-13-Python-3.10 - 11901629028.1 18 Nov 2024 10:01PM UTC 0
91.4
GitHub Action Run
2 macos-14-Python-3.10 - 11901629028.2 18 Nov 2024 10:01PM UTC 0
91.4
GitHub Action Run
3 macos-15-Python-3.10 - 11901629028.3 18 Nov 2024 10:01PM UTC 0
91.4
GitHub Action Run
4 ubuntu-24.04-Python-3.10 - 11901629028.4 18 Nov 2024 10:01PM UTC 0
91.4
GitHub Action Run
5 ubuntu-22.04-Python-3.10 - 11901629028.5 18 Nov 2024 10:01PM UTC 0
91.4
GitHub Action Run
6 ubuntu-20.04-Python-3.10 - 11901629028.6 18 Nov 2024 10:01PM UTC 0
91.4
GitHub Action Run
Source Files on build 11901629028
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