ROVI-org / auto-soh / 11373223870

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Store state estimates into an HDF5 file (#91)

* Start implementing a HDF5 writer

Handles incremental additions to a file

* Add missing file

* Refactor to set options when creating class

* Improve tests for the initializer

* Implement ability to write states to HDF5

* Add support to writing to interface function

* Write documentation for HDF5 output

* Supplement the intersphinx

* Switch to an "append-only" style

* Allow setting file arguments

E.g., so that we can control caching

* Change names of save options

* Support storing outputs as well

* Diag, not trace

* Introduce demo notebook

* Introduce function for reading dists from files

* Update notebook to estimate r0 and use read func

183 of 193 new or added lines in 3 files covered. (94.82%)

1603 of 1684 relevant lines covered (95.19%)

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