FAIRmat-NFDI / pynxtools / 10846911121

80%

Build Type

push

github

Committed by web-flow

Commit Message

Map to basesections reorganized 2 (#427)

* import basesections

* initiate base section map

* implement mapping in __to_section

* type hinting

* name testing

* create own basesections with mapping

* dynamically create class that inherits from base section

* use base section mapping function

* add base section directly

* rename nexus to nomad.

* rename nexus to nomad.

* harmonize collaborative work, functionality to get the correct definitions url

* rename file with remote definitions url

* add .txt to MANIFEST

* test for definitions url retrieval

* remove unneeded function

* Fix error Parsing NeXus file: Error from resolve_variadic_name function.

* Test effort to fix error in parsing nexus file.

* revert changes to parser

* revert changes to parser

* Nomad BaseSeection implemented properly.

* Attempt: Add normalize function.

* linting fix

* reorganize, dont use new classes

* implement both options

* tests in schema.py

* reasonable test for normalizing NXfabrication

* ruff formatting

* initial work on NXsample normalization

* Attempt to reference NXsample.

* lab_id can be populated properly, nut not sure CompositeSystemReference work or not.

* reference aadding with lev and sandor

* RB

* creating Entity entries via json files

* create proper Entity ELN

* Clean up schema.py

* converting NX to BS works properly in nexus parser.

* test fix.

* typo and test.

* automat prefix of base classes and application definition.

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Co-authored-by: Lukas Pielsticker <50139597+lukaspie@users.noreply.github.com>
Co-authored-by: GinzburgLev <ginzburglev95@gmail.com>
Co-authored-by: sanbrock <sandor.brockhauser@gmail.com>
Co-authored-by: Ron Hildebrandt <RonHildebrandt@uni-leipzig.de>

Run Details

7 of 12 new or added lines in 2 files covered. (58.33%)

3 existing lines in 2 files now uncovered.

687 of 710 relevant lines covered (96.76%)

4.63 hits per line