FAIRmat-NFDI / pynxtools / 10353008407
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Adds multi format reader (#250)

* Adds multi format reader

* Adds standard parsings

* Add json config parsing

* Use default factory for list

* Only resolve asterisk from same level

* Remove residual testing code

* Adds eln callback and config argument

* Adds list parsing for special prefixes

* Add **kwargs to example reader

* Add nomad .pylintrc

* modified:   pynxtools/dataconverter/readers/multi/reader.py
modified:   pynxtools/dataconverter/template.py

* Provide entry names and use __post_init__ for dataclass

* Silence mypy false positive

* Add ? notation for dependent keys

* Ruff formatting

* Remove pylintrc

* Move reader to src dir

* Adds processing order and optional groups removal

* Move reader into src and delete old location

* Fixes from testing

* Adapt tests to definition overwrite message

* Adapt get_data_dims

* update defs once again

* temporarily use feature branches in plugin tests

* switch to plugin main branches again

* Add docs for rules in NeXus

* Git reset in publish workflow

* fetch submodules, git reset before build

* add workflow to simulate publishing

* Add git status after build

* Run diff

* Remove publish test

* Remove unused import

* Add post_processing step

* Write to new dict in json parsing, otherwise we always create an entry named `entry`

* Copy values to new dict if no magic keyword is present

* Resolve links from written data

* add fix for missing keys in dict again (from c1ecb70)

* Ruff format

* Remove optional groups in the main loop

* Call data dims when entry name is present

* parse config before postprocess

* modify docs

* Pass keys to json callbacks

* Replace `ENTRY` instead of `ENTRY[entry]` in config dict

* Update prefix:value notation

* Correctly remove `!` dependent keys

* Allow lists of possible values in config file

* simplify static typing

* Fix removal of missi... (continued)

666 of 689 relevant lines covered (96.66%)

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Jobs
ID Job ID Ran Files Coverage
1 10353008407.1 0
86.94
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2 10353008407.2 0
87.08
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3 10353008407.3 0
96.23
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4 10353008407.4 0
96.23
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5 10353008407.5 0
96.23
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Source Files on build 10353008407
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