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dnanexus-rnd / GLnexus / 1179
93%

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DEFAULT BRANCH: master
Ran 03 Jul 2016 02:57PM UTC
Jobs 1
Files 28
Run time 1s
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Further revisions to unifier quality thresholds (#86)

Trifurcate `unifier_config::min_quality` to `min_AQ1`, `min_AQ2`, and `min_GQ`.

The AQ thresholds control adjudication of allele existence. The unifier includes alleles having any
observation with AQ > min_AQ1, or having more than one observation each with AQ > min_AQ2 (min_AQ1 >= min_AQ2).

The GQ threshold affects estimates of allele copy number. Genotype calls with GQ >= min_GQ count towards the copy number estimates of the constituent alleles.

105 of 105 new or added lines in 5 files covered. (100.0%)

2839 of 3031 relevant lines covered (93.67%)

205458.71 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
include/types.h
Jobs
ID Job ID Ran Files Coverage
2 1179.2 (TRAVIS_BUILD_TYPE=Coverage) 03 Jul 2016 02:57PM UTC 0
93.67
Travis Job 1179.2
Source Files on build 1179
Detailed source file information is not available for this build.
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