cokelaer / sequana / 8101665351
74%
master: 67%

LAST BUILD BRANCH: dev
DEFAULT BRANCH: master
Ran
Jobs 4
Files 166
Run time 1min
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Rst
coverage: 74.11% (-0.3%) from 74.458%
8101665351

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github

cokelaer 
New variants module to replace freebayes_vcf_filter

freebayes_vcf_filter is kept for back compatiblity

179 of 216 new or added lines in 4 files covered. (82.87%)

358 existing lines in 15 files now uncovered.

13537 of 18266 relevant lines covered (74.11%)

2.96 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
17.97
 0.0% sequana/pacbio_amplicon.py
36
82.35
 sequana/variants.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
15.38
 0.46% sequana/scripts/main/summary.py
2
92.0
 -8.0% sequana/viz/linkage.py
8
75.0
 -15.12% sequana/vcftools.py
9
0.0
 0.0% sequana/modules_report/bwa_bam_to_fastq.py
11
93.44
 -0.14% sequana/bedtools.py
11
97.57
 -0.02% sequana/fastq.py
13
94.82
 0.0% sequana/viz/heatmap.py
14
56.25
 -1.0% sequana/find_motif.py
14
69.66
 0.0% sequana/viz/dendogram.py
18
92.08
 -0.06% sequana/tools.py
19
8.93
 0.23% sequana/salmon.py
28
93.76
 -0.01% sequana/sequence.py
33
20.45
 -0.89% sequana/modules_report/uniprot_enrichment.py
40
17.39
 -0.71% sequana/modules_report/panther_enrichment.py
137
0.0
 -99.35% sequana/vcf_filter.py
Jobs
ID Job ID Ran Files Coverage
1 8101665351.1 166
74.09
2 8101665351.2 166
74.04
3 8101665351.3 166
74.02
4 8101665351.4 166
74.09
Source Files on build 8101665351