cokelaer / sequana / 6851111417
74%
master: 67%

LAST BUILD BRANCH: dev
DEFAULT BRANCH: master
Ran
Jobs 3
Files 161
Run time 26s
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Rst
coverage: 73.547%. Remained the same
6851111417

push

github

cokelaer 
Refactorised the coverage tools (sequana_coverage)

160 of 296 new or added lines in 27 files covered. (54.05%)

496 existing lines in 25 files now uncovered.

13245 of 18009 relevant lines covered (73.55%)

2.2 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
0.0
 0.0% sequana/scripts/main/biomart.py
1
0.0
 0.0% sequana/scripts/main/enrichment_kegg.py
1
0.0
 0.0% sequana/scripts/main/enrichment_panther.py
1
0.0
 0.0% sequana/scripts/main/enrichment_uniprot.py
1
0.0
 0.0% sequana/scripts/main/fasta.py
1
0.0
 0.0% sequana/scripts/main/feature_count.py
1
0.0
 0.0% sequana/scripts/main/gff_to_gtf.py
1
0.0
 0.0% sequana/scripts/main/gff_to_light_gff.py
1
0.0
 0.0% sequana/scripts/main/rnaseq_compare.py
1
0.0
 0.0% sequana/scripts/main/salmon.py
1
0.0
 0.0% sequana/scripts/main/summary.py
4
0.0
 0.0% sequana/scripts/main/taxonomy.py
7
84.65
 0.0% sequana/modules_report/coverage.py
7
0.0
 0.0% sequana/scripts/main/main.py
13
93.6
 0.0% sequana/bedtools.py
17
0.0
 0.0% sequana/modules_report/rnadiff.py
77
43.73
 0.0% sequana/modules_report/summary.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
95.24
 0.0% sequana/scripts/main/utils.py
3
84.44
 0.0% sequana/scripts/main/mapping.py
3
86.21
 0.0% sequana/scripts/main/ribodesigner.py
4
70.59
 0.0% sequana/scripts/main/fastq.py
5
82.88
 0.0% sequana/scripts/coverage.py
6
0.0
 0.0% sequana/scripts/main/gff_to_gtf.py
7
0.0
 0.0% sequana/scripts/main/feature_count.py
7
0.0
 0.0% sequana/scripts/main/gff_to_light_gff.py
7
0.0
 0.0% sequana/scripts/main/rnaseq_compare.py
7
0.0
 0.0% sequana/scripts/main/salmon.py
8
85.94
 0.0% sequana/scripts/main/variants_comparison.py
10
0.0
 0.0% sequana/scripts/main/fasta.py
11
0.0
 0.0% sequana/scripts/main/taxonomy.py
12
0.0
 0.0% sequana/scripts/main/main.py
13
0.0
 0.0% sequana/scripts/main/biomart.py
15
0.0
 0.0% sequana/scripts/main/summary.py
20
55.73
 0.0% sequana/scripts/main/lane_merging.py
26
0.0
 0.0% sequana/scripts/main/enrichment_panther.py
28
84.65
 0.0% sequana/modules_report/coverage.py
29
43.73
 0.0% sequana/modules_report/summary.py
30
0.0
 0.0% sequana/scripts/main/enrichment_uniprot.py
33
0.0
 0.0% sequana/scripts/main/enrichment_kegg.py
46
93.6
 0.0% sequana/bedtools.py
65
0.0
 0.0% sequana/scripts/main/rnadiff.py
100
0.0
 0.0% sequana/modules_report/rnadiff.py
Jobs
ID Job ID Ran Files Coverage
1 6851111417.1 161
73.53
2 6851111417.2 161
73.52
3 6851111417.3 161
73.48
Source Files on build 6851111417