angelolab / toffy / 496
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Rosetta workflow (#43)

* helper functions for rosetta

* helper functions for rosetta

* updated workflow

* updates for notebook

* more test and notebook updates

* updated workflow

* Add functionality to create a Rosetta matrix (#44)

* Initial commit of create_rosetta_matrices function

* Add stub for test functions

* Create rosetta_matrices.py

* Update rosetta.py

* Update rosetta.py

* Update rosetta.py

* Update rosetta_test.py

* Delete rosetta_matrices.py

* Update rosetta.py

* Update rosetta_test.py

* Update rosetta.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta.py

* Update rosetta.py

* Update rosetta_test.py

* Update rosetta_test.py

* Update rosetta_test.py

Co-authored-by: cwalker8 <99058759+cwalker8@users.noreply.github.com>

* code cleanup

* change pathnames

* support indexing specific channels for rosetta

* fix np.where error

* Switch replace_intensity function to work on a per-run basis

* update files

* remove copper

* clean up notebook

* update ark to newest version

* Update toffy/rosetta.py

Co-authored-by: alex-l-kong <31424707+alex-l-kong@users.noreply.github.com>

* code review changes

* Rosetta tweaks (#56)

* add tweaks

* clean up notebook

* add support for sub directories

* normalized subfolder

* notebook cleanup

Co-authored-by: alex-l-kong <31424707+alex-l-kong@users.noreply.git... (continued)

949 of 1025 relevant lines covered (92.59%)

0.93 hits per line

Jobs
ID Job ID Ran Files Coverage
1 496.1 (MPLBACKEND=Agg) 0
92.59
 Travis Job 496.1
Source Files on build 496
Detailed source file information is not available for this build.