broadinstitute / hellbender / 2712
81%
master: 81%

LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Ran
Jobs 2
Files 523
Run time 156min
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cmnbroad 
Implementation of GATKRead.getSAMString.

78 of 78 new or added lines in 5 files covered. (100.0%)

22166 of 27408 relevant lines covered (80.87%)

0.97 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/GoogleGenomicsReadToGATKReadAdapter.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/ReadUtils.java

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/cmdline/argumentcollections/OptionalReferenceInputArgumentCollection.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/engine/spark/JoinReadsWithVariants.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/utils/LoggingUtils.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/utils/report/GATKReportTable.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/engine/spark/datasources/ReadsSparkSource.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/walkers/bqsr/BaseRecalibrator.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/utils/SimpleInterval.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/transforms/bqsr/BaseRecalibratorFn.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/transformers/BQSRReadTransformer.java
5
100.0
 src/main/java/org/broadinstitute/hellbender/CommandLineProgramTest.java
5
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/ReferenceDataflowSource.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/pipelines/BaseRecalibratorDataflow.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/utils/dataflow/BucketUtils.java
7
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter.java
7
100.0
 src/main/java/org/broadinstitute/hellbender/utils/variant/VariantContextVariantAdapter.java
8
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/datasources/RefAPISource.java
10
100.0
 src/main/java/org/broadinstitute/hellbender/engine/dataflow/DataflowCommandLineProgram.java
10
100.0
 src/main/java/org/broadinstitute/hellbender/engine/spark/datasources/ReadsSparkSink.java
10
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/transforms/bqsr/BaseRecalibratorTransform.java
11
100.0
 src/main/java/org/broadinstitute/hellbender/tools/dataflow/pipelines/ReadsPreprocessingPipeline.java
12
100.0
 src/main/java/htsjdk/samtools/reference/HadoopReferenceSequenceFileFactory.java
15
100.0
 src/main/java/org/broadinstitute/hellbender/utils/report/GATKReport.java
16
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/GoogleGenomicsReadToGATKReadAdapter.java
18
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/ArtificialReadUtils.java
22
100.0
 src/main/java/org/broadinstitute/hellbender/tools/spark/pipelines/ReadsPipelineSpark.java
22
100.0
 src/main/java/org/broadinstitute/hellbender/utils/read/ReadUtils.java
28
100.0
 src/main/java/org/broadinstitute/hellbender/utils/dataflow/DataflowUtils.java
28
100.0
 src/main/java/org/broadinstitute/hellbender/utils/dataflow/SmallBamWriter.java
30
100.0
 src/main/java/org/broadinstitute/hellbender/utils/test/BaseTest.java
35
100.0
 src/main/java/org/broadinstitute/hellbender/utils/baq/BAQ.java
39
100.0
 src/main/java/org/broadinstitute/hellbender/utils/io/IOUtils.java
Jobs
ID Job ID Ran Files Coverage
1 2712.1 (CLOUD=mandatory) 0
18.75
 Travis Job 2712.1
3 2712.3 (CLOUD=false) 0
78.57
 Travis Job 2712.3
Source Files on build 2712
Detailed source file information is not available for this build.